RetrogeneDB ID: | retro_ocun_376 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:76848615..76849295(-) | ||
Located in intron of: | ENSOCUG00000007430 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027256 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005749 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.07 % |
Parental protein coverage: | 82.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDV |
VFTK.DLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGP.KTSFFQALGITTKISRGTIEILSDV | |
Retrocopy | VFTKKDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPKKTSFFQALGITTKISRGTIEILSDV |
Parental | QLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGVRNVASVCLQ |
QLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVF.NGSIYN.EVLDITE..LHS.FLEGVRNVASVCLQ | |
Retrocopy | QLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFNNGSIYNLEVLDITEEVLHSHFLEGVRNVASVCLQ |
Parental | IGYPT-VASVPHSIINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFVAAAPVAAASTAAPAAAAAAPA |
IGYPT..ASVPHSIINGYK.VLALSVETEYTFPLAEKVKAFLAD.SAFVAAAP.A.ASTAAPAAAAAAPA | |
Retrocopy | IGYPT<LASVPHSIINGYKHVLALSVETEYTFPLAEKVKAFLADSSAFVAAAPAAMASTAAPAAAAAAPA |
Parental | KVEAKEESEESDEDMGFGLFD |
KVEAKEES...DEDMGFGLFD | |
Retrocopy | KVEAKEES---DEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 141 .39 RPM |
SRP017611_kidney | 0 .10 RPM | 403 .09 RPM |
SRP017611_liver | 0 .15 RPM | 165 .56 RPM |