RetrogeneDB ID: | retro_mmus_2249 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:47459606..47460250(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp0 | ||
Ensembl ID: | ENSMUSG00000067274 | ||
Aliases: | Rplp0, 36B4, Arbp, L10E | ||
Description: | ribosomal protein, large, P0 [Source:MGI Symbol;Acc:MGI:1927636] |
Percent Identity: | 50.66 % |
Parental protein coverage: | 70.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | DLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSF-FQALGITTKISRGTIEILSDVQLIK |
D.TE.R..LLANK.P.....G.I....VTV.AQ.TGL.PEKT...F.....T..ISR....I.SD...I. | |
Retrocopy | DFTEVRKTLLANKEPTTTSTGTITWYDVTVLAQSTGLRPEKTLL<F*PSNLTVIISRK--QIMSDMHVIQ |
Parental | TGDKVGASEATLLNMLNISPFSFGLIIQQ-VFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGY |
.GDK..AS.ATL.N.....PF.FGL.I.Q.VF.NGS.YNP.VLD.T.Q.LHS.F.EGV..VAS....I.. | |
Retrocopy | SGDKLEASKATLMNIP--CPFFFGL-ISQ<VFGNGSPYNPAVLDNTGQTLHSHFIEGVLFVASIYQLIVC |
Parental | PTVASVPHSIINGYKRVLALSVET-EYTFPLTEKVKAFLADPSAFAA-AAPAAAATTAAPAAAAAPAKAE |
.T..SVPHSII.G.K...A..VET.E.TFPL.EKVKAF...P..F......A...T..APA..A...KAE | |
Retrocopy | LTLPSVPHSIISGSKKAPAFFVET>EKTFPLVEKVKAFFSVPTVFGL>SSVATVTT-SAPAVPA---KAE |
Parental | AKEES-EESDEDMGFGLFD |
AK..S......D..F..FD | |
Retrocopy | AKDRS<VKLGKDRQFRFFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 84 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 52 .76 RPM |
SRP007412_heart | 0 .00 RPM | 346 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 166 .93 RPM |
SRP007412_liver | 0 .00 RPM | 145 .14 RPM |
SRP007412_testis | 0 .00 RPM | 165 .44 RPM |