RetrogeneDB ID: | retro_mmus_143 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:102864844..102865798(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000063696 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp0 | ||
Ensembl ID: | ENSMUSG00000067274 | ||
Aliases: | Rplp0, 36B4, Arbp, L10E | ||
Description: | ribosomal protein, large, P0 [Source:MGI Symbol;Acc:MGI:1927636] |
Percent Identity: | 99.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE | |
Retrocopy | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA | |
Retrocopy | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQA |
LGITTKIS.GTIEILSDVQLIKTGDKV.ASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQA | |
Retrocopy | LGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQA |
Parental | LHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAP |
LHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPL.EKVKAFLADPSAFAAAAP | |
Retrocopy | LHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFAAAAP |
Parental | AAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD |
AAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD | |
Retrocopy | AAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .52 RPM | 84 .85 RPM |
SRP007412_cerebellum | 7 .25 RPM | 52 .76 RPM |
SRP007412_heart | 0 .37 RPM | 346 .60 RPM |
SRP007412_kidney | 22 .95 RPM | 166 .93 RPM |
SRP007412_liver | 16 .22 RPM | 145 .14 RPM |
SRP007412_testis | 41 .99 RPM | 165 .44 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_138241 | 2 libraries | 0 libraries | 0 libraries | 4 libraries | 1066 libraries |