RetrogeneDB ID: | retro_rnor_1350 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:41486083..41486691(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp0 | ||
Ensembl ID: | ENSRNOG00000001148 | ||
Aliases: | Rplp0, Arbp | ||
Description: | 60S acidic ribosomal protein P0 [Source:UniProtKB/Swiss-Prot;Acc:P19945] |
Percent Identity: | 68.63 % |
Parental protein coverage: | 63.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFV-FTKEDLTEIRDMLLANKVPAAARAGAIAP |
KAVVLMGKNTMM.KA...HL.N.PALEK.LPHI.G.VGFV.FTKEDLTEIRDM.LAN.V.A....G.... | |
Retrocopy | KAVVLMGKNTMMLKAVWWHLDNKPALEKVLPHIPGIVGFV>FTKEDLTEIRDMMLANNVLATICHGVTTL |
Parental | CEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLI |
.EV.V.AQ.T.LGP.K.SFFQALGI..KI..GT.EILSDVQL.K.GD.VGASEATLLN.L.ISPFSF..I | |
Retrocopy | YEVIVTAQDTNLGP*KSSFFQALGIIAKIFKGTTEILSDVQLTKPGDTVGASEATLLNTLSISPFSFRVI |
Parental | IQQVFDNGSIYSPEVLDITEQALHTRFLE-GVRNVASVCLQIGYPTVASVPHSIINGYKRVLAL |
I.QV.DNGSI...EVLDITE..L....L...V.NVASVCLQ.GY.TV.S....II..YKRVLAL | |
Retrocopy | IRQVSDNGSICNLEVLDITELTLYSCILV>CV*NVASVCLQVGYLTVPSGLCTIISAYKRVLAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 204 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 481 .08 RPM |
SRP017611_liver | 0 .00 RPM | 276 .68 RPM |