RetrogeneDB ID: | retro_cpor_850 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:16657284..16657714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSCPOG00000001324 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.25 % |
Parental protein coverage: | 55.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | KKAKGKKVAPAPAVVKKQEAKKVV-NPLFEKRPKNFGIGQDIQ-PKRDLTRFVKWPRYIRLQRQRAI-LY |
KKAK.K.VA...AV.KKQEA.KVV.N.L.EK..KNFG.GQDIQ...RD.T..V..P.YI..Q.QRAI.L. | |
Retrocopy | KKAKEKVVARSSAVMKKQEA-KVV<NSL-EKMLKNFGLGQDIQ<SRRDVTCLVIRPCYIWPQ*QRAI<LL |
Parental | KRLKVPPAINQFTQAL-DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVP-TKRPPVLRAG |
K.LK.PPAINQ........Q.ATQL.KL.H..R...K.......L...EK....KG..P..KRPP.L.AG | |
Retrocopy | KQLKEPPAINQSIHSQ<EGQIATQLRKLIHTCRSGGKEQQ*RLGLS*GEKPPK-KGILP<SKRPPALHAG |
Parental | VNTVTTLVENKKA |
VN.VT.LVE...A | |
Retrocopy | VNIVTSLVESSPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 151 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 253 .76 RPM |
SRP017611_liver | 0 .00 RPM | 174 .76 RPM |
SRP040447_lung | 0 .00 RPM | 405 .55 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 388 .76 RPM |