RetrogeneDB - Parental gene ENSCAFG00000017680 details

							
>ENSCAFG00000017680
CAGCCGAAAGGGAAGAAGGCGAAGGGGAAGAAGGTGGCCCCGGCCCCTGCCGTGGTGAAGAAGCAGGAGGCCAAGAAGGT

GGTCAACCCCCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATCGGACAGGACATCCAGCCCAAGAGGGACCTCACCCGCT

TTGTCAAGTGGCCGCGCTACATCCGGCTGCAGCGCCAGAGGGCCATCCTGTATAAACGTCTCAAGGTGCCTCCTGCCATT

AACCAGTTCACCCAGGCCTTGGACCGCCAAACGGCTACACAACTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACCAA

GCAAGAGAAGAAGCAGAGGCTGTTGGCCCGGGCCGAGAAGAAAGCTGCCGGCAAAGGGGATGTCCCCACTAAGAGGCCGC

CTGTCCTTCGAGCTGGGGTTAACACTGTCACCACCTTGGTGGAAAACAAGAAGGCTCAGCTGGTAGTGATAGCCCACGAC

GTGGATCCCATTGAGCTGGTTGTCTTCCTGCCTGCCCTGTGTCGTAAGATGGGGGTTCCTTACTGCATTATCAAGGGGAA

GGCCAGGCTGGGGCGTCTGGTCCACAGGAAGACCTGCACCACAGTCGCCTTCACACAGGTTAACTCGGAAGACAAGGGAG

CTCTGGCTAAGCTGGTAGAAGCCATCCGGACCAATTACAATGACAGATACGATGAGATCCGCCGCCACTGGGGAGGCAAT

GTCCTGGGTCCGAAGTCAGTGGCTCGCATCGCCAAGCTGGAAAAAGCAAAGGCTAAAGAACTGGCCACCAAGCTGGGCTA

A

Library	Parental gene expression (RPM)
SRP017611_brain	141 .32 RPM
SRP017611_kidney	835 .24 RPM
SRP017611_liver	316 .88 RPM
SRP012049_cerebellum	422 .93 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011708	ortholog_one2one	29 retrogenes	retro_amel_1000, retro_amel_1058, retro_amel_1149, retro_amel_1159, retro_amel_1207, retro_amel_1220, retro_amel_1269, retro_amel_1314, retro_amel_1417, retro_amel_142, retro_amel_1429, retro_amel_1471, retro_amel_1499, retro_amel_1506, retro_amel_1641, retro_amel_1644, retro_amel_169, retro_amel_170, retro_amel_1812, retro_amel_1873, retro_amel_357, retro_amel_463, retro_amel_525, retro_amel_529, retro_amel_544, retro_amel_671, retro_amel_726, retro_amel_758, retro_amel_801,
Bos taurus	ENSBTAG00000011559	possible_ortholog	5 retrogenes	retro_btau_1345, retro_btau_1494, retro_btau_564, retro_btau_890, retro_btau_936,
Callithrix jacchus	ENSCJAG00000014827	ortholog_one2many	3 retrogenes	retro_cjac_199, retro_cjac_343, retro_cjac_49,
Cavia porcellus	ENSCPOG00000001324	ortholog_one2one	4 retrogenes	retro_cpor_1296, retro_cpor_423, retro_cpor_828, retro_cpor_850,
Dasypus novemcinctus	ENSDNOG00000024424	possible_ortholog	8 retrogenes	retro_dnov_1245, retro_dnov_1509, retro_dnov_169, retro_dnov_1861, retro_dnov_2538, retro_dnov_2591, retro_dnov_302, retro_dnov_825,
Dipodomys ordii	ENSDORG00000006471	ortholog_one2many	3 retrogenes	retro_dord_198, retro_dord_218, retro_dord_516,
Felis catus	ENSFCAG00000005825	ortholog_one2one	20 retrogenes	retro_fcat_1123, retro_fcat_1137, retro_fcat_1170, retro_fcat_1277, retro_fcat_1315, retro_fcat_1318, retro_fcat_1344, retro_fcat_1528, retro_fcat_1583, retro_fcat_1771, retro_fcat_1980, retro_fcat_214, retro_fcat_252, retro_fcat_385, retro_fcat_389, retro_fcat_468, retro_fcat_542, retro_fcat_628, retro_fcat_694, retro_fcat_943,
Homo sapiens	ENSG00000148303	possible_ortholog	21 retrogenes	retro_hsap_1229, retro_hsap_1438, retro_hsap_2037, retro_hsap_2544, retro_hsap_3019, retro_hsap_3081, retro_hsap_3133, retro_hsap_3202, retro_hsap_3421, retro_hsap_3503, retro_hsap_3668, retro_hsap_3830, retro_hsap_3890, retro_hsap_428, retro_hsap_4296, retro_hsap_467, retro_hsap_4754, retro_hsap_682, retro_hsap_707, retro_hsap_801, retro_hsap_809,
Gorilla gorilla	ENSGGOG00000014442	possible_ortholog	48 retrogenes	retro_ggor_1034, retro_ggor_1042, retro_ggor_1087, retro_ggor_1107, retro_ggor_1190, retro_ggor_1249, retro_ggor_1408, retro_ggor_1409, retro_ggor_1460, retro_ggor_1541, retro_ggor_1591, retro_ggor_172, retro_ggor_1724, retro_ggor_1881, retro_ggor_194, retro_ggor_2004, retro_ggor_2033, retro_ggor_2087, retro_ggor_2117, retro_ggor_2147, retro_ggor_2313, retro_ggor_2410, retro_ggor_2430, retro_ggor_2480, retro_ggor_2522, retro_ggor_2578, retro_ggor_2611, retro_ggor_2617, retro_ggor_2618, retro_ggor_2779, retro_ggor_2781, retro_ggor_2871, retro_ggor_2872, retro_ggor_288, retro_ggor_2960, retro_ggor_310, retro_ggor_333, retro_ggor_386, retro_ggor_539, retro_ggor_626, retro_ggor_636, retro_ggor_640, retro_ggor_658, retro_ggor_663, retro_ggor_815, retro_ggor_865, retro_ggor_904, retro_ggor_963,
Loxodonta africana	ENSLAFG00000006436	ortholog_one2one	2 retrogenes	retro_lafr_1059, retro_lafr_1132,
Macropus eugenii	ENSMEUG00000014550	ortholog_one2many	16 retrogenes	retro_meug_1268, retro_meug_133, retro_meug_1362, retro_meug_1523, retro_meug_1581, retro_meug_1872, retro_meug_2011, retro_meug_2080, retro_meug_2101, retro_meug_2123, retro_meug_401, retro_meug_632, retro_meug_654, retro_meug_687, retro_meug_699, retro_meug_919,
Myotis lucifugus	ENSMLUG00000004666	ortholog_one2one	10 retrogenes	retro_mluc_1033, retro_mluc_1087, retro_mluc_1359, retro_mluc_1365, retro_mluc_1745, retro_mluc_1877, retro_mluc_2074, retro_mluc_541, retro_mluc_558, retro_mluc_670,
Macaca mulatta	ENSMMUG00000022341	ortholog_one2one	9 retrogenes	retro_mmul_113, retro_mmul_130, retro_mmul_204, retro_mmul_230, retro_mmul_252, retro_mmul_259, retro_mmul_309, retro_mmul_33, retro_mmul_4,
Monodelphis domestica	ENSMODG00000012754	ortholog_one2many	3 retrogenes	retro_mdom_1347, retro_mdom_418, retro_mdom_586,
Mus musculus	ENSMUSG00000062647	possible_ortholog	10 retrogenes	retro_mmus_120, retro_mmus_141, retro_mmus_165, retro_mmus_166, retro_mmus_214, retro_mmus_226, retro_mmus_267, retro_mmus_34, retro_mmus_43, retro_mmus_93,
Nomascus leucogenys	ENSNLEG00000013068	possible_ortholog	22 retrogenes	retro_nleu_1051, retro_nleu_1056, retro_nleu_137, retro_nleu_1404, retro_nleu_1418, retro_nleu_1682, retro_nleu_1920, retro_nleu_2130, retro_nleu_2254, retro_nleu_2341, retro_nleu_2397, retro_nleu_2423, retro_nleu_2641, retro_nleu_267, retro_nleu_2822, retro_nleu_2853, retro_nleu_399, retro_nleu_432, retro_nleu_562, retro_nleu_780, retro_nleu_796, retro_nleu_82,
Otolemur garnettii	ENSOGAG00000014027	ortholog_one2one	16 retrogenes	retro_ogar_1014, retro_ogar_1172, retro_ogar_1638, retro_ogar_1735, retro_ogar_1815, retro_ogar_2774, retro_ogar_3012, retro_ogar_3097, retro_ogar_319, retro_ogar_404, retro_ogar_57, retro_ogar_685, retro_ogar_758, retro_ogar_850, retro_ogar_926, retro_ogar_994,
Ochotona princeps	ENSOPRG00000005726	possible_ortholog	4 retrogenes	retro_opri_451, retro_opri_629, retro_opri_65, retro_opri_922,
Pongo abelii	ENSPPYG00000019730	possible_ortholog	52 retrogenes	retro_pabe_1022, retro_pabe_1104, retro_pabe_1112, retro_pabe_1160, retro_pabe_1189, retro_pabe_1305, retro_pabe_1368, retro_pabe_1652, retro_pabe_1662, retro_pabe_1871, retro_pabe_2059, retro_pabe_2264, retro_pabe_2286, retro_pabe_2305, retro_pabe_2394, retro_pabe_2501, retro_pabe_2522, retro_pabe_2534, retro_pabe_2553, retro_pabe_2588, retro_pabe_2654, retro_pabe_267, retro_pabe_271, retro_pabe_2896, retro_pabe_293, retro_pabe_2960, retro_pabe_3009, retro_pabe_3033, retro_pabe_3079, retro_pabe_3118, retro_pabe_3171, retro_pabe_3231, retro_pabe_330, retro_pabe_3444, retro_pabe_3467, retro_pabe_3469, retro_pabe_3500, retro_pabe_3700, retro_pabe_379, retro_pabe_519, retro_pabe_540, retro_pabe_549, retro_pabe_581, retro_pabe_645, retro_pabe_664, retro_pabe_682, retro_pabe_715, retro_pabe_725, retro_pabe_755, retro_pabe_864, retro_pabe_914, retro_pabe_963,
Pteropus vampyrus	ENSPVAG00000017045	possible_ortholog	11 retrogenes	retro_pvam_1240, retro_pvam_125, retro_pvam_1288, retro_pvam_1371, retro_pvam_1472, retro_pvam_270, retro_pvam_307, retro_pvam_333, retro_pvam_510, retro_pvam_540, retro_pvam_640,
Rattus norvegicus	ENSRNOG00000049097	possible_ortholog	10 retrogenes	retro_rnor_123, retro_rnor_15, retro_rnor_238, retro_rnor_303, retro_rnor_323, retro_rnor_346, retro_rnor_368, retro_rnor_398, retro_rnor_403, retro_rnor_86,
Sarcophilus harrisii	ENSSHAG00000004337	ortholog_one2many	4 retrogenes	retro_shar_157, retro_shar_338, retro_shar_401, retro_shar_494,
Ictidomys tridecemlineatus	ENSSTOG00000003671	possible_ortholog	3 retrogenes	retro_itri_1034, retro_itri_53, retro_itri_920,
Tupaia belangeri	ENSTBEG00000008595	possible_ortholog	26 retrogenes	retro_tbel_1102, retro_tbel_112, retro_tbel_1314, retro_tbel_1420, retro_tbel_1484, retro_tbel_174, retro_tbel_1770, retro_tbel_1892, retro_tbel_1916, retro_tbel_2015, retro_tbel_2063, retro_tbel_2630, retro_tbel_2748, retro_tbel_2896, retro_tbel_3005, retro_tbel_3017, retro_tbel_3445, retro_tbel_4295, retro_tbel_4298, retro_tbel_4737, retro_tbel_542, retro_tbel_686, retro_tbel_861, retro_tbel_949, retro_tbel_950, retro_tbel_960,
Tarsius syrichta	ENSTSYG00000005467	possible_ortholog	20 retrogenes	retro_tsyr_1009, retro_tsyr_1012, retro_tsyr_1166, retro_tsyr_1168, retro_tsyr_1280, retro_tsyr_1346, retro_tsyr_158, retro_tsyr_1798, retro_tsyr_182, retro_tsyr_1824, retro_tsyr_1939, retro_tsyr_2039, retro_tsyr_214, retro_tsyr_251, retro_tsyr_484, retro_tsyr_63, retro_tsyr_696, retro_tsyr_880, retro_tsyr_907, retro_tsyr_911,
Tursiops truncatus	ENSTTRG00000007645	ortholog_one2many	3 retrogenes	retro_ttru_1334, retro_ttru_1681, retro_ttru_1824,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_311	71.64	98.50	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_340	68.12	84.59	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_380	66.67	61.65	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_423	75.89	52.26	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_476	77.36	98.87	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_518	73.31	99.25	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_605	71.67	67.29	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cfam_694	73.76	82.71	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cfam_723	82.04	77.07	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cfam_827	79.55	96.99	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cfam_853	72.95	76.69	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cfam_927	73.66	75.56	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cfam_935	71.83	53.01	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cfam_1121	73.94	61.28	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cfam_1123	72.79	54.51	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cfam_1165	54.55	56.02	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cfam_1187	66.42	99.25	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cfam_1242	83.90	99.62	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_cfam_1365	66.19	50.75	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_cfam_1429	72.94	62.03	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_cfam_1471	67.86	72.56	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_cfam_1497	91.89	69.55	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_cfam_1532	65.03	68.42	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_cfam_1553	70.25	89.10	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_cfam_1563	81.72	99.25	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_cfam_1683	78.21	57.52	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_cfam_1711	87.07	98.87	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_cfam_1721	79.13	85.71	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_cfam_1750	69.55	99.25	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_cfam_1865	69.10	66.54	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_cfam_1898	80.08	99.25	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_cfam_2032	77.07	99.62	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_cfam_2103	76.00	82.71	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_cfam_2111	85.39	99.62	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_cfam_2120	74.68	56.77	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_cfam_2144	84.52	63.16	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000017680 retrocopies

Parental gene:	ENSCAFG00000017680
Aliases:	None
Description:	None
Organism:	*Dog (Canis familiaris)*
Coordinates:	9:49784060..49786271(+)

Parental gene:

ENSCAFG00000017680