Parental gene:

ENSCJAG00000014827

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:117365524..117368050(+)


>ENSCJAG00000014827
CAGCCGAAAGGAAAGAAGGCCAAGGGGAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGT
GGTAAATCCCCTGTTTGAAAAACGGCCTAAAAATTTTGGTATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCT
TTGTCAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTACAAGCGGCTGAAAGTGCCTCCTGCAATT
AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAACTGCTTAAGCTGGCCCACAAGTATAGACCAGAGACAAA
GCAAGAGAAGAAGCAGAGGCTGTTGGCCCGGGCCGAGAAGAAAGCGGCTGGCAAAGGGGACGTCCCCACTAAGAGACCAC
CTGTCCTTCGAGCAGGAGTCAACACAATCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
GTGGATCCCATTGAGCTGGTCGTCTTCTTGCCTGCCCTGTGTCGAAAAATGGGAGTCCCTTACTGCATTATCAAGGGGAA
GGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACTACTGTCGCCTTCACACAGGTTAACGCGGAAGACAAAGGTG
CCTTGGCTAAGCTGGTGGAAGCCATCCGCACCAATTACAATGACAGATACGATGAGATCCGCCGTCACTGGGGAGGCAAT
GTCCTGGGTCCCAAGTCTGTGGCTCGCATTGCAAAGCTAGAGAAGGCAAAAGCTAAAGAGCTTGCCACGAAACTGGGTTA
A

Library Parental gene expression (RPM)
SRP051959_spleen 216 .32 RPM
SRP051959_skeletal_muscle 199 .93 RPM
SRP051959_lymph_node 201 .22 RPM
SRP051959_lung 154 .49 RPM
SRP051959_liver 212 .27 RPM
SRP051959_kidney 162 .11 RPM
SRP051959_heart 134 .13 RPM
SRP051959_colon 154 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 ortholog_one2many 29 retrogenes
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017680 ortholog_one2many 36 retrogenes
Cavia porcellus ENSCPOG00000001324 ortholog_one2many 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Felis catus ENSFCAG00000005825 ortholog_one2many 20 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 ortholog_one2many 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 ortholog_one2many 10 retrogenes
Macaca mulatta ENSMMUG00000022341 ortholog_one2many 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 ortholog_one2many 16 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 possible_ortholog 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 possible_ortholog 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_49 86.74 99.25
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2. retro_cjac_199 99.62 99.62
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3. retro_cjac_343 87.92 99.25
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Download FASTA sequences of all ENSCJAG00000014827 retrocopies