RetrogeneDB ID:

retro_mmul_230

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:15749081..15749882(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000030929
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.2191
Ensembl ID:ENSMMUG00000022341
Aliases:None
Description:60S ribosomal protein L7a [Source:RefSeq peptide;Acc:NP_001137511]


Retrocopy-Parental alignment summary:






>retro_mmul_230
ATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCTGGCCCCTGCTGTCGTGAAAAAGCAGGAGGCCAAGAAAGT
GGTGAATCCCCTGTTTGAGAAAAGACCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCT
TTGTGAAATGGCCTCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCTATT
AACCAGTTCACCCAGGCCCTGGACTGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAA
GCAAGAGAAGAAGCAGAGGCTGCTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGACGTCCCCACTAAGAGACCAC
CTGTCCTTCAAGCAGGAGCTAACACCGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCACATGAC
GTGGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAA
GGCCAGACTGGGCCGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAGGTGAACTCGGAAGACAAAGGCG
CTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAATGACAGATACGATGAGATCCGCCGTCACTGGGGTGGCAAT
GTCCTGGGTCCCAAGTCTGTGTCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAGCTGGGTTA
A

ORF - retro_mmul_230 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY
PKGKKAKGKKVA.APAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY
RetrocopyPKGKKAKGKKVALAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY
ParentalKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVN
KRLKVPPAINQFTQALD.QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVL.AG.N
RetrocopyKRLKVPPAINQFTQALDCQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLQAGAN
ParentalTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSED
TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSED
RetrocopyTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSED
ParentalKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
KGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSV.RIAKLEKAKAKELATKLG
RetrocopyKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVSRIAKLEKAKAKELATKLG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .22 RPM 45 .16 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 205 .31 RPM
SRP007412_cerebellum 0 .06 RPM 37 .39 RPM
SRP007412_heart 0 .00 RPM 97 .69 RPM
SRP007412_kidney 0 .00 RPM 79 .22 RPM
SRP007412_liver 0 .08 RPM 190 .72 RPM
SRP007412_testis 0 .11 RPM 200 .42 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_230 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_230 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_230 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 27 parental genes, and 398 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001170829 retrocopies
Bos taurus ENSBTAG000000115595 retrocopies
Canis familiaris ENSCAFG0000001768036 retrocopies
Callithrix jacchus ENSCJAG000000148273 retrocopies
Cavia porcellus ENSCPOG000000013244 retrocopies
Dasypus novemcinctus ENSDNOG000000244248 retrocopies
Dipodomys ordii ENSDORG000000064713 retrocopies
Felis catus ENSFCAG0000000582520 retrocopies
Homo sapiens ENSG0000014830321 retrocopies
Gorilla gorilla ENSGGOG0000001444248 retrocopies
Loxodonta africana ENSLAFG000000064362 retrocopies
Macropus eugenii ENSMEUG0000001455016 retrocopies
Myotis lucifugus ENSMLUG0000000466610 retrocopies
Macaca mulatta ENSMMUG00000022341 9 retrocopies
Monodelphis domestica ENSMODG000000127543 retrocopies
Mus musculus ENSMUSG0000006264710 retrocopies
Nomascus leucogenys ENSNLEG0000001306822 retrocopies
Otolemur garnettii ENSOGAG0000001402716 retrocopies
Ochotona princeps ENSOPRG000000057264 retrocopies
Pongo abelii ENSPPYG0000001973052 retrocopies
Pteropus vampyrus ENSPVAG0000001704511 retrocopies
Rattus norvegicus ENSRNOG0000004909710 retrocopies
Sarcophilus harrisii ENSSHAG000000043374 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000036713 retrocopies
Tupaia belangeri ENSTBEG0000000859526 retrocopies
Tarsius syrichta ENSTSYG0000000546720 retrocopies
Tursiops truncatus ENSTTRG000000076453 retrocopies



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