RetrogeneDB ID: | retro_dnov_2050 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_44447:13372..13756(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL29 | ||
Ensembl ID: | ENSDNOG00000000209 | ||
Aliases: | None | ||
Description: | ribosomal protein L29 [Source:HGNC Symbol;Acc:10331] |
Percent Identity: | 67.16 % |
Parental protein coverage: | 82.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVD-PKFLRNMRFAK-KHNKKGLKKMQANNAKAMSAR |
M.KSKNHTTHNQS.KWHR.GIKKP.SQRYES.KG.D..KFLRNM.FA....N..GLK.M..NNAKAM.AR | |
Retrocopy | MVKSKNHTTHNQSQKWHRHGIKKPHSQRYESSKGAD>TKFLRNMCFAR<ESNRNGLKNMRVNNAKAMNAR |
Parental | AEAIKAL-VKPKEVKP-KIPKSGSRKLNRLAYIAHPKL-GKRARARIAKGLRLSRPKSKAKDQT |
AEAIK.L...P....P.K.PK....KL.R.A..A.P.L.GKRA.A..AKGLRLSRPKSK.KDQT | |
Retrocopy | AEAIKVL<PSPRRSSP<KVPKNHDPKLSRPANVARPRL<GKRAHAHTAKGLRLSRPKSKVKDQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 568 .82 RPM |
SRP012922_cerebellum | 0 .00 RPM | 277 .27 RPM |
SRP012922_heart | 0 .00 RPM | 282 .61 RPM |
SRP012922_kidney | 0 .00 RPM | 740 .34 RPM |
SRP012922_liver | 0 .00 RPM | 394 .29 RPM |
SRP012922_lung | 0 .00 RPM | 733 .69 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 404 .84 RPM |
SRP012922_spleen | 0 .11 RPM | 802 .83 RPM |