RetrogeneDB ID: | retro_ecab_151 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:148353677..148353950(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSECAG00000021530 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 71.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLL |
A..L.W.G.QFQGKAAI...L...PFQKIQ..IT..DHQP.....I...VVG.LK.DE..I..FHQ.F.L | |
Retrocopy | AAHLSWGGEQFQGKAAILGELTNMPFQKIQRIITSYDHQPVSNNSILTLVVGKLKVDEEMITEFHQLFVL |
Parental | KNINDAWVCTNDMFRLALHNF |
KN.N..W.CT.D.FR.AL.NF | |
Retrocopy | KNMNHKWICTSDIFRAALCNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 16 .23 RPM |
SRP021940_cerebellum | 0 .00 RPM | 52 .40 RPM |
SRP021940_embryo | 0 .00 RPM | 84 .65 RPM |
SRP021940_placental_villous | 0 .00 RPM | 39 .74 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 48 .37 RPM |
SRP021940_testis | 0 .00 RPM | 75 .33 RPM |