RetrogeneDB ID: | retro_ptro_2835 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:76193379..76193755(+) | ||
Located in intron of: | ENSPTRG00000021042 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSPTRG00000008248 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIT- |
MGDK.IW.Q..SSFIQHYYQLFD.DRT..G.IYIDASCLTWEGQQ.QGKAAIVE.LSSL.FQKIQ.SIT. | |
Retrocopy | MGDKLIWKQTESSFIQHYYQLFDKDRTRIGTIYIDASCLTWEGQQCQGKAAIVE-LSSLLFQKIQYSIT> |
Parental | AQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG |
AQDH.PTPDSC.ISMVVG.LK.DEDPI.GFHQMFLLKNI..AWVCTNDMFRLAL.NFG | |
Retrocopy | AQDH*PTPDSC-ISMVVGELKVDEDPIIGFHQMFLLKNISEAWVCTNDMFRLALLNFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 65 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .07 RPM |
SRP007412_heart | 0 .03 RPM | 18 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .55 RPM |
SRP007412_liver | 0 .00 RPM | 19 .21 RPM |
SRP007412_testis | 0 .00 RPM | 19 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4181 |
Gorilla gorilla | retro_ggor_2806 |