Parental gene: | NUTF2, ENSCJAG00000016015 |
| Aliases: | None |
| Description: | nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:21606375..21632532(+) |
>ENSCJAG00000016015
ATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTATTACCAGTTATTTGATAATGATAGAAC
CCAACTAGGCGCAATTTACATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGG
AGAAGTTGTCTAGCCTTCCATTCCAGAAAATCCAGCACAGCATCACGGCGCAGGACCATCAGCCCACGCCAGATAGCTGC
ATCATCAGCATGGTTGTGGGCCAGCTTAAGGCGGATGAAGACCCCATCATGGGGTTCCACCAGATGTTCCTATTAAAGAA
CATCAACGATGCTTGGGTTTGCACCAATGACATGTTCAGGCTCGCCCTGCACAACTTCGGCTGA
ATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTATTACCAGTTATTTGATAATGATAGAAC
CCAACTAGGCGCAATTTACATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGG
AGAAGTTGTCTAGCCTTCCATTCCAGAAAATCCAGCACAGCATCACGGCGCAGGACCATCAGCCCACGCCAGATAGCTGC
ATCATCAGCATGGTTGTGGGCCAGCTTAAGGCGGATGAAGACCCCATCATGGGGTTCCACCAGATGTTCCTATTAAAGAA
CATCAACGATGCTTGGGTTTGCACCAATGACATGTTCAGGCTCGCCCTGCACAACTTCGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 3 .47 RPM |
| SRP051959_skeletal_muscle | 4 .52 RPM |
| SRP051959_lymph_node | 2 .83 RPM |
| SRP051959_lung | 3 .07 RPM |
| SRP051959_liver | 2 .82 RPM |
| SRP051959_kidney | 2 .86 RPM |
| SRP051959_heart | 4 .16 RPM |
| SRP051959_colon | 2 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017548 | possible_ortholog | 5 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000003059 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000021530 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000008167 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000102898 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023925 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000031037 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000009874 | ortholog_one2one | 11 retrogenes | |
| Myotis lucifugus | ENSMLUG00000025175 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000012038 | ortholog_one2many | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000005517 | ortholog_one2many | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006737 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000008450 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004889 | ortholog_one2one | 7 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006322 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000013727 | ortholog_one2one | 4 retrogenes | |
| Procavia capensis | ENSPCAG00000015344 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000007472 | ortholog_one2one | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000008248 | ortholog_one2one | 7 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016605 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000006100 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030295 | possible_ortholog | 3 retrogenes | |
| Drosophila melanogaster | FBgn0031145 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_587 | 81.19 | 77.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_777 | 53.76 | 70.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_924 | 89.76 | 99.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1328 | 96.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2247 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2562 | 81.51 | 92.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2864 | 62.50 | 80.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2913 | 88.57 | 81.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_2953 | 77.95 | 99.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_2978 | 84.25 | 99.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cjac_3126 | 78.90 | 84.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cjac_3299 | 95.24 | 99.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cjac_4044 | 88.19 | 99.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cjac_4173 | 80.47 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016015 retrocopies