Parental gene:

NUTF2, ENSPTRG00000008248

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:67127997..67154664(+)


>ENSPTRG00000008248
ATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAAC
CCAACTAGGCGCAATTTACATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGG
AGAAGTTGTCTAGCCTTCCGTTCCAGAAAATCCAGCACAGCATCACCGCGCAGGACCATCAGCCCACTCCAGATAGCTGC
ATCATCAGCATGGTTGTGGGCCAGCTTAAGGCGGATGAAGACCCCATCATGGGGTTCCACCAGATGTTCCTATTAAAGAA
CATCAACGATGCTTGGGTTTGCACCAATGACATGTTCAGGCTCGCCCTGCACAACTTTGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 65 .22 RPM
SRP007412_cerebellum 27 .07 RPM
SRP007412_heart 18 .04 RPM
SRP007412_kidney 30 .55 RPM
SRP007412_liver 19 .21 RPM
SRP007412_testis 19 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017548 possible_ortholog 5 retrogenes
retro_amel_1225, retro_amel_134, retro_amel_1485, retro_amel_415, retro_amel_445,
Choloepus hoffmanni ENSCHOG00000003059 ortholog_one2one 3 retrogenes
retro_chof_1386, retro_chof_1619, retro_chof_2488,
Callithrix jacchus ENSCJAG00000016015 ortholog_one2one 14 retrogenes
retro_cjac_1328, retro_cjac_2247, retro_cjac_2562, retro_cjac_2864, retro_cjac_2913, retro_cjac_2953, retro_cjac_2978, retro_cjac_3126, retro_cjac_3299, retro_cjac_4044, retro_cjac_4173, retro_cjac_587, retro_cjac_777, retro_cjac_924,
Equus caballus ENSECAG00000021530 ortholog_one2one 1 retrogene
retro_ecab_151,
Felis catus ENSFCAG00000008167 ortholog_one2one 3 retrogenes
retro_fcat_154, retro_fcat_743, retro_fcat_845,
Homo sapiens ENSG00000102898 ortholog_one2one 7 retrogenes
retro_hsap_1322, retro_hsap_1480, retro_hsap_1858, retro_hsap_207, retro_hsap_4181, retro_hsap_4854, retro_hsap_544,
Gorilla gorilla ENSGGOG00000023925 ortholog_one2one 5 retrogenes
retro_ggor_1032, retro_ggor_2152, retro_ggor_279, retro_ggor_2806, retro_ggor_3028,
Loxodonta africana ENSLAFG00000031037 ortholog_one2one 1 retrogene
retro_lafr_623,
Macropus eugenii ENSMEUG00000009874 ortholog_one2one 11 retrogenes
retro_meug_1023, retro_meug_136, retro_meug_1539, retro_meug_1585, retro_meug_1778, retro_meug_2140, retro_meug_253, retro_meug_282, retro_meug_352, retro_meug_676, retro_meug_748,
Myotis lucifugus ENSMLUG00000025175 ortholog_one2many 3 retrogenes
retro_mluc_1265, retro_mluc_2194, retro_mluc_911,
Macaca mulatta ENSMMUG00000012038 ortholog_one2one 6 retrogenes
retro_mmul_1160, retro_mmul_1270, retro_mmul_2127, retro_mmul_2169, retro_mmul_2593, retro_mmul_27,
Monodelphis domestica ENSMODG00000005517 ortholog_one2many 6 retrogenes
retro_mdom_1031, retro_mdom_1291, retro_mdom_1488, retro_mdom_1489, retro_mdom_1903, retro_mdom_37,
Mustela putorius furo ENSMPUG00000006737 ortholog_one2one 4 retrogenes
retro_mputfur_229, retro_mputfur_614, retro_mputfur_714, retro_mputfur_962,
Mus musculus ENSMUSG00000008450 possible_ortholog 1 retrogene
retro_mmus_232,
Nomascus leucogenys ENSNLEG00000004889 ortholog_one2one 7 retrogenes
retro_nleu_1295, retro_nleu_1791, retro_nleu_1855, retro_nleu_2374, retro_nleu_2384, retro_nleu_2953, retro_nleu_731,
Oryctolagus cuniculus ENSOCUG00000006322 ortholog_one2many 1 retrogene
retro_ocun_115,
Ochotona princeps ENSOPRG00000013727 ortholog_one2one 4 retrogenes
retro_opri_1089, retro_opri_1102, retro_opri_1170, retro_opri_229,
Procavia capensis ENSPCAG00000015344 ortholog_one2one 1 retrogene
retro_pcap_56,
Pongo abelii ENSPPYG00000007472 ortholog_one2one 7 retrogenes
retro_pabe_1101, retro_pabe_1229, retro_pabe_1515, retro_pabe_3421, retro_pabe_3772, retro_pabe_433, retro_pabe_502,
Pteropus vampyrus ENSPVAG00000016605 ortholog_one2one 1 retrogene
retro_pvam_843,
Sarcophilus harrisii ENSSHAG00000006100 ortholog_one2one 1 retrogene
retro_shar_274,
Sus scrofa ENSSSCG00000030295 possible_ortholog 3 retrogenes
retro_sscr_1223, retro_sscr_710, retro_sscr_740,
Drosophila melanogaster FBgn0031145 ortholog_one2many 1 retrogene
retro_dmel_27,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_338 87.40 100.00
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2. retro_ptro_409 62.93 91.34
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3. retro_ptro_903 91.41 100.00
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4. retro_ptro_1001 90.91 60.63
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5. retro_ptro_1239 89.01 70.87
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6. retro_ptro_2835 83.59 100.00
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7. retro_ptro_3230 88.98 100.00
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Download FASTA sequences of all ENSPTRG00000008248 retrocopies