RetrogeneDB ID: | retro_fcat_1395 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:48303021..48303499(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSFCAG00000008480 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 65.29 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | SGVT-VNDEVIKVFNDMKVRKSS-TQEEIKKRKKAVLFCLSDDKR-QIIVEEAKQILVGDIGDTVEDPYT |
SGVT..N..V.KV.NDMKVRKS..T..E..KRKK.VLF.L.D.KR.....E.AKQ.LVGD..D.VEDPYT | |
Retrocopy | SGVT>MNNDVNKVVNDMKVRKST<TRSE--KRKKLVLFRLCDGKR<KSLLEKAKQMLVGDTSDIVEDPYT |
Parental | SFVKLLPLNDCRYA-LYDATYETKESKKEDLVFIFWAPESA-PLKSKMIYASSKDAIKKKFTGIKHEWQV |
SFVKLL.LNDC..A.LY.A.....ESKKEDLVF.FW.PESA..L...MIYA.SKDAIKKKFT.IK...QV | |
Retrocopy | SFVKLLSLNDCQFA<LYNA-HSKQESKKEDLVFKFWGPESA<TL*HEMIYAISKDAIKKKFTDIKLKLQV |
Parental | NGLDDIKDRSTLGEK-LGGNVVVSLEGKPL |
NGLD.IK..S.LGEK..G..VV..LEG.PL | |
Retrocopy | NGLDNIKEYSSLGEK>KGNIVV-PLEGNPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .21 RPM |
SRP017611_liver | 0 .00 RPM | 8 .19 RPM |