RetrogeneDB ID: | retro_fcat_1456 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:79576486..79576892(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030229 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013272 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.18 % |
Parental protein coverage: | 81.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDP-YATFVKMLPDKDCRYALYDATYET |
SSTPEEVKKRKKAVLFCLS.DKKNIILEEGKEILV.DVGQTVDDP.YATFVK.LPDKDCRYAL.DA.Y.T | |
Retrocopy | SSTPEEVKKRKKAVLFCLSKDKKNIILEEGKEILVSDVGQTVDDP>YATFVKLLPDKDCRYALCDAPYQT |
Parental | KESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSA |
KESKKEDLVFIF.APEC.PLKSK.IYASSKDAIKKKLTGIK.ELQANCYEEVKD.CTLAEKLGGSA | |
Retrocopy | KESKKEDLVFIFRAPECGPLKSKVIYASSKDAIKKKLTGIKRELQANCYEEVKDQCTLAEKLGGSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 262 .83 RPM |
SRP017611_kidney | 0 .10 RPM | 177 .36 RPM |
SRP017611_liver | 0 .00 RPM | 58 .83 RPM |