RetrogeneDB ID: | retro_sscr_327 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:109282162..109282651(+) | ||
Located in intron of: | ENSSSCG00000022952 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000030593 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSSSCG00000001959 | ||
Aliases: | None | ||
Description: | Sus scrofa cofilin 2 (muscle) (CFL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001025215] |
Percent Identity: | 72.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASGVTVNDEVIKVFNDMKVR-KSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDP-Y |
MASG..V.D.VIKVFNDMKVR.KSST..E.KKRKKAVLFCLS.DK......E.K.ILVGD.G.TV.DP.Y | |
Retrocopy | MASGMAVSDGVIKVFNDMKVR>KSSTPKEVKKRKKAVLFCLSEDKN---ILEGKEILVGDMGQTVDDP<Y |
Parental | TSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN |
..FVK.L...DCRYALYDAT.ETKES.KE.LVFI.WAPE.APLKSKMIYASSKDAIKKK.TGIKHE.Q.N | |
Retrocopy | ATFVKMLLDKDCRYALYDATHETKESQKENLVFILWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQAN |
Parental | GLDDIKDRSTLGEKLGGNVVVSLEGKPL |
.....KDR.TL.EKLGG..V.SLE.KPL | |
Retrocopy | CYEQVKDRRTLAEKLGGSAVISLESKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 157 .95 RPM | 1 .86 RPM |
SRP014902_testis | 42 .43 RPM | 9 .90 RPM |
SRP018288_heart | 6 .99 RPM | 687 .11 RPM |
SRP018288_kidney | 43 .34 RPM | 50 .43 RPM |
SRP018288_liver | 23 .99 RPM | 34 .54 RPM |
SRP018288_lung | 182 .98 RPM | 52 .13 RPM |
SRP018856_adipose | 30 .19 RPM | 27 .90 RPM |
SRP035408_brain | 70 .79 RPM | 33 .95 RPM |
SRP035408_liver | 18 .02 RPM | 20 .37 RPM |