Parental gene:

CFL2, ENSCPOG00000008996

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_23:2158006..2158692(-)


>ENSCPOG00000008996
CAGGCATCTGGAGTTACAGTGAATGATGAAGTTATCAAAGTTTTTAATGATATGAAAGTAAGGAAATCTTCTACACAAGA
GGAGATCAAAAAGCGAAAGAAAGCAGTTCTCTTCTGTTTAAGTGATGACAAAAGACAAATAATTGTAGAGGAAGCGAAGC
AGATCTTGGTGGGTGACATTGGTGATACTGTAGAGGACCCCTACACATCTTTTGTGAAGTTGCTACCTCTGAATGATTGC
CGATATGCTTTGTACGATGCCACATACGAAACAAAAGAGTCTAAGAAAGAAGACCTAGTATTTATATTCTGGGCTCCTGA
AAGTGCACCGTTAAAAAGCAAGATGATTTATGCTAGCTCTAAAGATGCCATTAAAAAGAAATTTACAGGGATTAAACACG
AGTGGCAAGTAAATGGCTTGGATGATATTAAGGACCGTTCAACACTTGGAGAGAAACTGGGAGGCAATGTAGTAGTTTCA
CTGGAAGGGAAACCGTTA

Library Parental gene expression (RPM)
SRP017611_liver 9 .49 RPM
SRP017611_kidney 7 .96 RPM
SRP017611_brain 14 .90 RPM
SRP040447_lung 7 .72 RPM
SRP040447_skeletal_muscle 352 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015508 ortholog_one2one 1 retrogene
retro_amel_1347,
Canis familiaris ENSCAFG00000032562 ortholog_one2one 1 retrogene
retro_cfam_1006,
Cavia porcellus ENSCPOG00000005573 within_species_paralog 2 retrogenes
retro_cpor_700, retro_cpor_812,
Echinops telfairi ENSETEG00000006010 ortholog_one2many 3 retrogenes
retro_etel_1579, retro_etel_1622, retro_etel_684,
Felis catus ENSFCAG00000008480 ortholog_one2one 2 retrogenes
retro_fcat_1223, retro_fcat_1395,
Latimeria chalumnae ENSLACG00000018011 ortholog_one2one 1 retrogene
retro_lcha_23,
Loxodonta africana ENSLAFG00000010579 ortholog_one2one 1 retrogene
retro_lafr_1041,
Macropus eugenii ENSMEUG00000000739 ortholog_one2one 11 retrogenes
retro_meug_1026, retro_meug_1138, retro_meug_125, retro_meug_1266, retro_meug_1666, retro_meug_1791, retro_meug_2025, retro_meug_2062, retro_meug_210, retro_meug_321, retro_meug_668,
Microcebus murinus ENSMICG00000009237 ortholog_one2one 1 retrogene
retro_mmur_493,
Monodelphis domestica ENSMODG00000012949 ortholog_one2many 1 retrogene
retro_mdom_171,
Mus musculus ENSMUSG00000062929 ortholog_one2one 1 retrogene
retro_mmus_660,
Otolemur garnettii ENSOGAG00000032321 ortholog_one2one 1 retrogene
retro_ogar_2346,
Pteropus vampyrus ENSPVAG00000002798 ortholog_one2one 1 retrogene
retro_pvam_398,
Rattus norvegicus ENSRNOG00000045892 ortholog_one2one 1 retrogene
retro_rnor_684,
Sarcophilus harrisii ENSSHAG00000004732 ortholog_one2one 1 retrogene
retro_shar_528,
Sus scrofa ENSSSCG00000001959 ortholog_one2one 2 retrogenes
retro_sscr_1198, retro_sscr_327,
Ictidomys tridecemlineatus ENSSTOG00000001675 ortholog_one2one 3 retrogenes
retro_itri_1313, retro_itri_581, retro_itri_632,
Tupaia belangeri ENSTBEG00000000391 possible_ortholog 2 retrogenes
retro_tbel_29, retro_tbel_4131,
Vicugna pacos ENSVPAG00000003273 ortholog_one2one 1 retrogene
retro_vpac_644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1003 59.88 96.99
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Download FASTA sequences of all ENSCPOG00000008996 retrocopies