RetrogeneDB ID: | retro_rnor_684 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:44912121..44912598(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cfl2 | ||
Ensembl ID: | ENSRNOG00000045892 | ||
Aliases: | None | ||
Description: | cofilin-2 [Source:RefSeq peptide;Acc:NP_001102452] |
Percent Identity: | 84.43 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ASGVTVNDEVIKVFNDMKVRKSSTQEEIK-KRKKAVLFCLSDDKRQIIVEEAKQILVG-DIGDTVEDPYT |
ASGVTVNDEVIKV.NDMKV.KSST.EEI..KRKKAVLFCLS.DKR.....E.K..L.G.DIGDTVEDPYT | |
Retrocopy | ASGVTVNDEVIKVLNDMKV-KSST*EEIE<KRKKAVLFCLSNDKRR----ESKADLGG>DIGDTVEDPYT |
Parental | SFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNG |
SFVKLLPLN.CRYALYDATYETKESKKEDLVFIFWAP.SA.LKSKMIYA.SK.AI.KKF.GIKH.WQVNG | |
Retrocopy | SFVKLLPLNGCRYALYDATYETKESKKEDLVFIFWAPKSARLKSKMIYANSKNAI-KKFIGIKHKWQVNG |
Parental | LDDIKDRSTLGEKLGGSVVVSLEGKPL |
LDDIKD..TLGEKLGGSVVVSLEGKPL | |
Retrocopy | LDDIKDCMTLGEKLGGSVVVSLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .92 RPM |
SRP017611_liver | 0 .00 RPM | 30 .53 RPM |