RetrogeneDB ID: | retro_cfam_1006 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:12639188..12639481(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSCAFG00000032562 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 62.75 % |
Parental protein coverage: | 59.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETK-ESKKEDLVFIFWAPESAPLKS |
..IIV..AKQILVGD..DTVEDPY.SFVKLL.LNDC..ALYD.T..T....K...L.F.FW.PE...L.S | |
Retrocopy | KEIIVTKAKQILVGDTNDTVEDPYSSFVKLLSLNDCQFALYDTTLTTR>SEKED-LEFKFWGPERVSLQS |
Parental | KMIY-ASSKDAIKK-KFTGIKHEWQVNGLDDI |
KMIY....K...K..KFTGIKH.WQVNG.DDI | |
Retrocopy | KMIY<LALKMSLKR<KFTGIKHKWQVNGMDDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 84 .84 RPM |
SRP017611_brain | 0 .08 RPM | 70 .58 RPM |
SRP017611_kidney | 0 .20 RPM | 65 .18 RPM |
SRP017611_liver | 0 .22 RPM | 24 .65 RPM |