RetrogeneDB ID: | retro_ggor_730 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:80298827..80299211(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSGGOG00000001142 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MASRLLRGAGTLAAQALRARGPSG-AAAVRSMASGGGVPTDEEQATGLEREIMLAAKKGLDPYNILAPKG |
MASRL....G.L..Q.LRA.G.SG..A...SMAS.G.VPTD.....GLE.....AA.KGLDP.N.L..K. | |
Retrocopy | MASRLCHRVGVLPLQTLRAHGSSG<VALMWSMASEGVVPTDDD-VSGLEM*VIMAA*KGLDP*NTLLQKE |
Parental | ASGTREDPNLVPSISNKRIVGCICEEDNTSVVW-FWLHKGEAQRCPRCGAHYKLVPQQLAH |
ASGT.EDP.LV.SI.NK.IVGCICEE.N..V...FWLHKGE.Q.CP.C..HY.LVP.QL.H | |
Retrocopy | ASGTKEDPYLVSSITNK*IVGCICEEYNSAVLQ>FWLHKGETQQCPNCEIHYHLVPRQLTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 100 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .61 RPM |
SRP007412_heart | 0 .00 RPM | 199 .75 RPM |
SRP007412_kidney | 0 .00 RPM | 153 .66 RPM |
SRP007412_liver | 0 .00 RPM | 70 .82 RPM |
SRP007412_testis | 0 .31 RPM | 45 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_903 |
Pan troglodytes | retro_ptro_623 |
Pongo abelii | retro_pabe_778 |