RetrogeneDB - Parental gene ENSCAFG00000002387 details

Parental gene:	COX5B, ENSCAFG00000002387
Aliases:	None
Description:	Canis lupus familiaris cytochrome c oxidase polypeptide Vb (COX5B), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001144130]
Organism:	*Dog (Canis familiaris)*
Coordinates:	10:44979739..44985971(-)

                            
>ENSCAFG00000002387
ATGGCTTCAAGGTTACTTCGCGGAGTTGGAGCGCTGGCCGCGCAGGCCCTCAGGGCTCGCGGTCCCAATGGAGTCGCCGC

GGTGCGCTCAATGGCGTCTGGAGGTGGTGTTCCTACTGATGACGAGCAGGCGACAGGGCTGGAGAGGGAGGTCATGATGG

CCGCACGGAAGGGACTGGACCCATACAATATTCTAGCCCCAAAGGCAGCTGCAGGCACCAAAGAAGACCCTAATTTAGTC

CCATCTATCACCAACAAGCGAATAGTGGGCTGCATCTGTGAAGAGGACAATAGTACCGTCATCTGGTTTTGGCTGCACAA

AGGCGAGGCCCAGCGATGCCCTAGCTGTGGAACCCATTACAAGCTGGTGCCCCACCAGTTGGCCCACTGA

Library	Parental gene expression (RPM)
SRP012049_cerebellum	115 .71 RPM
SRP017611_brain	73 .60 RPM
SRP017611_kidney	309 .91 RPM
SRP017611_liver	71 .79 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000005242	ortholog_one2many	7 retrogenes	retro_amel_1546, retro_amel_1583, retro_amel_1744, retro_amel_1867, retro_amel_536, retro_amel_65, retro_amel_746,
Bos taurus	ENSBTAG00000018542	ortholog_one2many	2 retrogenes	retro_btau_1018, retro_btau_1651,
Callithrix jacchus	ENSCJAG00000016911	ortholog_one2one	6 retrogenes	retro_cjac_1679, retro_cjac_2119, retro_cjac_2477, retro_cjac_3096, retro_cjac_495, retro_cjac_505,
Dipodomys ordii	ENSDORG00000014994	ortholog_one2one	3 retrogenes	retro_dord_246, retro_dord_360, retro_dord_72,
Equus caballus	ENSECAG00000007968	ortholog_one2one	3 retrogenes	retro_ecab_189, retro_ecab_674, retro_ecab_762,
Erinaceus europaeus	ENSEEUG00000000258	ortholog_one2one	1 retrogene	retro_eeur_402,
Felis catus	ENSFCAG00000001704	ortholog_one2one	7 retrogenes	retro_fcat_1572, retro_fcat_1795, retro_fcat_1961, retro_fcat_331, retro_fcat_568, retro_fcat_600, retro_fcat_776,
Homo sapiens	ENSG00000135940	ortholog_one2one	7 retrogenes	retro_hsap_1295, retro_hsap_270, retro_hsap_3058, retro_hsap_3667, retro_hsap_3908, retro_hsap_903, retro_hsap_997,
Gorilla gorilla	ENSGGOG00000001142	ortholog_one2one	6 retrogenes	retro_ggor_2101, retro_ggor_2479, retro_ggor_2635, retro_ggor_317, retro_ggor_730, retro_ggor_796,
Loxodonta africana	ENSLAFG00000009386	ortholog_one2one	2 retrogenes	retro_lafr_605, retro_lafr_696,
Macropus eugenii	ENSMEUG00000005855	ortholog_one2one	2 retrogenes	retro_meug_1202, retro_meug_1712,
Myotis lucifugus	ENSMLUG00000014512	ortholog_one2many	1 retrogene	retro_mluc_336,
Mustela putorius furo	ENSMPUG00000011327	ortholog_one2one	8 retrogenes	retro_mputfur_1412, retro_mputfur_1528, retro_mputfur_1559, retro_mputfur_367, retro_mputfur_811, retro_mputfur_851, retro_mputfur_871, retro_mputfur_983,
Mus musculus	ENSMUSG00000061518	ortholog_one2many	1 retrogene	retro_mmus_59,
Nomascus leucogenys	ENSNLEG00000011668	ortholog_one2many	5 retrogenes	retro_nleu_114, retro_nleu_1143, retro_nleu_1652, retro_nleu_380, retro_nleu_871,
Oryctolagus cuniculus	ENSOCUG00000017085	ortholog_one2one	2 retrogenes	retro_ocun_1639, retro_ocun_508,
Otolemur garnettii	ENSOGAG00000016840	ortholog_one2one	3 retrogenes	retro_ogar_1136, retro_ogar_1365, retro_ogar_2269,
Ochotona princeps	ENSOPRG00000002030	ortholog_one2one	3 retrogenes	retro_opri_1128, retro_opri_334, retro_opri_568,
Pongo abelii	ENSPPYG00000012078	ortholog_one2one	6 retrogenes	retro_pabe_1074, retro_pabe_1907, retro_pabe_2532, retro_pabe_3184, retro_pabe_399, retro_pabe_778,
Pan troglodytes	ENSPTRG00000012257	ortholog_one2one	7 retrogenes	retro_ptro_1983, retro_ptro_226, retro_ptro_2488, retro_ptro_2658, retro_ptro_623, retro_ptro_754, retro_ptro_887,
Rattus norvegicus	ENSRNOG00000016660	ortholog_one2many	2 retrogenes	retro_rnor_2740, retro_rnor_2741,
Sorex araneus	ENSSARG00000011275	ortholog_one2one	1 retrogene	retro_sara_579,
Sarcophilus harrisii	ENSSHAG00000017358	ortholog_one2one	3 retrogenes	retro_shar_656, retro_shar_793, retro_shar_797,
Sus scrofa	ENSSSCG00000008195	ortholog_one2many	4 retrogenes	retro_sscr_306, retro_sscr_562, retro_sscr_757, retro_sscr_893,
Ictidomys tridecemlineatus	ENSSTOG00000010980	ortholog_one2many	3 retrogenes	retro_itri_1185, retro_itri_848, retro_itri_94,
Tupaia belangeri	ENSTBEG00000012130	ortholog_one2one	4 retrogenes	retro_tbel_1170, retro_tbel_2821, retro_tbel_3647, retro_tbel_3684,
Tursiops truncatus	ENSTTRG00000013490	ortholog_one2one	5 retrogenes	retro_ttru_1438, retro_ttru_253, retro_ttru_270, retro_ttru_596, retro_ttru_790,
Vicugna pacos	ENSVPAG00000006560	ortholog_one2one	1 retrogene	retro_vpac_249,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_398	68.18	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_712	51.16	65.62	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_1231	95.35	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_1284	64.89	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_1307	65.12	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_1494	65.38	99.22	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_1779	65.77	86.05	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cfam_2130	67.42	66.67	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000002387 retrocopies

Parental gene:

COX5B, ENSCAFG00000002387