Parental gene:

COX5B, ENSSSCG00000008195

Aliases:None
Description:Sus scrofa mitochondrial cytochrome c oxidase subunit Vb (Cox5b), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001007517]
Organism:Pig (Sus scrofa)
Coordinates:3:59376374..59378460(+)


>ENSSSCG00000008195
ATGGCTTCAAGGTTACTCCGTGGAGCTGGAGCGCTAGCCGCGCAGACCTTGAGGGCCCGAGGTCCCAATGGAGTCGCCGT
TGTGCGGTCTATGGCATCTGGAGGTGGTGTTCCTACTGATGAGGAGCAGGCGACTGGGCTGGAGAGGGAGGTCATGATGG
CCGCCCGCAAGGGACTGGACCCATACAATATACTTGCCCCAAAGGCAGCCTCAGGTACCAAGGAAGACCCTAATTTAGTC
CCCTCCATCACCAACAAGCGGATAGTGGGCTGCATCTGTGAAGAAGACAACAGTACTGTCATCTGGTTCTGGGTGCACAA
AGGCGAGACCCAGCGATGCCCCAGCTGTGGAACCCATTATAAGCTGGTGTCGCACCAGCTGGCCCACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 149 .32 RPM
SRP014902_testis 102 .55 RPM
SRP018856_adipose 231 .38 RPM
SRP018288_kidney 349 .01 RPM
SRP018288_lung 46 .94 RPM
SRP018288_liver 156 .87 RPM
SRP018288_heart 372 .13 RPM
SRP035408_liver 160 .17 RPM
SRP035408_brain 175 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005242 ortholog_many2many 7 retrogenes
retro_amel_1546, retro_amel_1583, retro_amel_1744, retro_amel_1867, retro_amel_536, retro_amel_65, retro_amel_746,
Bos taurus ENSBTAG00000018542 ortholog_one2one 2 retrogenes
retro_btau_1018, retro_btau_1651,
Canis familiaris ENSCAFG00000002387 ortholog_one2many 8 retrogenes
retro_cfam_1231, retro_cfam_1284, retro_cfam_1307, retro_cfam_1494, retro_cfam_1779, retro_cfam_2130, retro_cfam_398, retro_cfam_712,
Callithrix jacchus ENSCJAG00000016911 ortholog_one2many 6 retrogenes
retro_cjac_1679, retro_cjac_2119, retro_cjac_2477, retro_cjac_3096, retro_cjac_495, retro_cjac_505,
Dipodomys ordii ENSDORG00000014994 ortholog_one2many 3 retrogenes
retro_dord_246, retro_dord_360, retro_dord_72,
Equus caballus ENSECAG00000007968 ortholog_one2many 3 retrogenes
retro_ecab_189, retro_ecab_674, retro_ecab_762,
Erinaceus europaeus ENSEEUG00000000258 ortholog_one2many 1 retrogene
retro_eeur_402,
Felis catus ENSFCAG00000001704 ortholog_one2many 7 retrogenes
retro_fcat_1572, retro_fcat_1795, retro_fcat_1961, retro_fcat_331, retro_fcat_568, retro_fcat_600, retro_fcat_776,
Homo sapiens ENSG00000135940 ortholog_one2many 7 retrogenes
retro_hsap_1295, retro_hsap_270, retro_hsap_3058, retro_hsap_3667, retro_hsap_3908, retro_hsap_903, retro_hsap_997,
Gorilla gorilla ENSGGOG00000001142 ortholog_one2many 6 retrogenes
retro_ggor_2101, retro_ggor_2479, retro_ggor_2635, retro_ggor_317, retro_ggor_730, retro_ggor_796,
Loxodonta africana ENSLAFG00000009386 ortholog_one2many 2 retrogenes
retro_lafr_605, retro_lafr_696,
Macropus eugenii ENSMEUG00000005855 ortholog_one2many 2 retrogenes
retro_meug_1202, retro_meug_1712,
Myotis lucifugus ENSMLUG00000014512 ortholog_many2many 1 retrogene
retro_mluc_336,
Mustela putorius furo ENSMPUG00000011327 ortholog_one2many 8 retrogenes
retro_mputfur_1412, retro_mputfur_1528, retro_mputfur_1559, retro_mputfur_367, retro_mputfur_811, retro_mputfur_851, retro_mputfur_871, retro_mputfur_983,
Mus musculus ENSMUSG00000061518 ortholog_many2many 1 retrogene
retro_mmus_59,
Nomascus leucogenys ENSNLEG00000011668 ortholog_many2many 5 retrogenes
retro_nleu_114, retro_nleu_1143, retro_nleu_1652, retro_nleu_380, retro_nleu_871,
Oryctolagus cuniculus ENSOCUG00000017085 ortholog_one2many 2 retrogenes
retro_ocun_1639, retro_ocun_508,
Otolemur garnettii ENSOGAG00000016840 ortholog_one2many 3 retrogenes
retro_ogar_1136, retro_ogar_1365, retro_ogar_2269,
Ochotona princeps ENSOPRG00000002030 ortholog_one2many 3 retrogenes
retro_opri_1128, retro_opri_334, retro_opri_568,
Pongo abelii ENSPPYG00000012078 ortholog_one2many 6 retrogenes
retro_pabe_1074, retro_pabe_1907, retro_pabe_2532, retro_pabe_3184, retro_pabe_399, retro_pabe_778,
Pan troglodytes ENSPTRG00000012257 ortholog_one2many 7 retrogenes
retro_ptro_1983, retro_ptro_226, retro_ptro_2488, retro_ptro_2658, retro_ptro_623, retro_ptro_754, retro_ptro_887,
Rattus norvegicus ENSRNOG00000016660 ortholog_many2many 2 retrogenes
retro_rnor_2740, retro_rnor_2741,
Sorex araneus ENSSARG00000011275 ortholog_one2many 1 retrogene
retro_sara_579,
Sarcophilus harrisii ENSSHAG00000017358 ortholog_one2many 3 retrogenes
retro_shar_656, retro_shar_793, retro_shar_797,
Ictidomys tridecemlineatus ENSSTOG00000010980 ortholog_many2many 3 retrogenes
retro_itri_1185, retro_itri_848, retro_itri_94,
Tupaia belangeri ENSTBEG00000012130 ortholog_one2many 4 retrogenes
retro_tbel_1170, retro_tbel_2821, retro_tbel_3647, retro_tbel_3684,
Tursiops truncatus ENSTTRG00000013490 ortholog_one2many 5 retrogenes
retro_ttru_1438, retro_ttru_253, retro_ttru_270, retro_ttru_596, retro_ttru_790,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_306 78.82 65.12
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2. retro_sscr_562 58.59 95.35
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3. retro_sscr_757 52.78 82.95
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4. retro_sscr_893 59.49 58.91
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Download FASTA sequences of all ENSSSCG00000008195 retrocopies