RetrogeneDB ID: | retro_ggor_74 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:552766..553285(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000001323 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN2 | ||
Ensembl ID: | ENSGGOG00000011378 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK |
MAS.FKK...AS.SQ.....PKPELTE.QKQE.REAFDLFD.DG.GTIDVKELKVAMRALGFEP.KEE.K | |
Retrocopy | MASSFKKPSAASTSQKRKVAPKPELTEDQKQEVREAFDLFDVDGSGTIDVKELKVAMRALGFEPRKEEMK |
Parental | KMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
KMISE.DKEGTGK..F.DFL.VMTQKMS.KDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE | |
Retrocopy | KMISEVDKEGTGKISFNDFLAVMTQKMSQKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDE |
Parental | ELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY |
ELQEMIDEADRDGDGEV.E.EFLRIMKKT.LY | |
Retrocopy | ELQEMIDEADRDGDGEVNEEEFLRIMKKTNLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 51 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .58 RPM |
SRP007412_heart | 0 .41 RPM | 8 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 96 .54 RPM |
SRP007412_liver | 0 .00 RPM | 32 .37 RPM |
SRP007412_testis | 400 .83 RPM | 47 .66 RPM |