RetrogeneDB ID: | retro_rnor_304 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:830097..830616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000016409 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cetn2 | ||
Ensembl ID: | ENSRNOG00000017059 | ||
Aliases: | Cetn2, Calt | ||
Description: | Centrin 2, isoform CRA_a; Protein Cetn2 [Source:UniProtKB/TrEMBL;Acc:G3V9W0] |
Percent Identity: | 81.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKTNMASSAQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDMKELKVAMRALGFEPKKEEIK |
MAS.F.K.N.AS....K...PKPELTE.QKQE.REAFDLFD.DG.GTID.KELKVAMRALGFEP.KEE.K | |
Retrocopy | MASTFRKSNVASTSYKKKVGPKPELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMK |
Parental | KMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
KMISE.DKE.TGK..F.DFL.VMTQKM.EKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGE.LTDE | |
Retrocopy | KMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDE |
Parental | ELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY |
ELQEMIDEADRDGDGEVNE.EFL.IMKKT.LY | |
Retrocopy | ELQEMIDEADRDGDGEVNEEEFLKIMKKTNLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .68 RPM |
SRP017611_liver | 0 .07 RPM | 25 .42 RPM |