RetrogeneDB ID: | retro_itri_636 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393308.1:13772422..13772860(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN2 | ||
Ensembl ID: | ENSSTOG00000023853 | ||
Aliases: | None | ||
Description: | centrin, EF-hand protein, 2 [Source:HGNC Symbol;Acc:1867] |
Percent Identity: | 74.17 % |
Parental protein coverage: | 86.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LTEEQKQEIREAFDLFDADGTGTIDIKELKVAMR-ALGFEPKKEEIKKMISEID-KEGTGKMNFSDFLTV |
LTEEQKQEI.EAFDLFDA.G.GTI..K.LKVAMR..LGFEPKKE.IKKMI.EID.K.G..K......LTV | |
Retrocopy | LTEEQKQEIWEAFDLFDAEGIGTINVKQLKVAMREGLGFEPKKE-IKKMIGEID>KTGQEKLILVT-LTV |
Parental | MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLK-RVAKELGENLTDEELQEMIDEADRDGDGEVNEQE |
M..KM.EK..KEEILKAFKLF..D..GKISFKNLK..VAKELGENLT.EE.QEMIDE.DRDGDGE.NE.E | |
Retrocopy | MIKKMFEKHIKEEILKAFKLFNNDSFGKISFKNLK<AVAKELGENLTSEEIQEMIDEVDRDGDGEINE-E |
Parental | FLRIMKKTSLY |
FL.IMK.TSL. | |
Retrocopy | FLHIMKNTSLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |