RetrogeneDB ID: | retro_sscr_822 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 5:59188004..59188319(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000000596 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN2 | ||
Ensembl ID: | ENSSSCG00000012757 | ||
Aliases: | None | ||
Description: | centrin, EF-hand protein, 2 [Source:HGNC Symbol;Acc:1867] |
Percent Identity: | 73.58 % |
Parental protein coverage: | 61.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KTNVASAAQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEI |
K.N.A...Q.KRMSPKPE.TEEQKQEI.EAFDLFD.D..GTID.K.LKV.MR.LG.EPKKEEIKK.ISE. | |
Retrocopy | KANMAPTVQ*KRMSPKPEPTEEQKQEI*EAFDLFDID*AGTIDAKKLKVTMRVLGSEPKKEEIKK-ISEF |
Parental | DKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKL |
.KEGTGKMNF..FLTV..QKMSEK..KEEI.KA.K. | |
Retrocopy | YKEGTGKMNFIEFLTVRAQKMSEKYIKEEIQKAGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .96 RPM |
SRP014902_testis | 0 .00 RPM | 29 .99 RPM |
SRP018288_heart | 0 .00 RPM | 33 .71 RPM |
SRP018288_kidney | 0 .00 RPM | 44 .33 RPM |
SRP018288_liver | 0 .00 RPM | 35 .50 RPM |
SRP018288_lung | 0 .00 RPM | 54 .99 RPM |
SRP018856_adipose | 0 .00 RPM | 50 .47 RPM |
SRP035408_brain | 0 .00 RPM | 72 .73 RPM |
SRP035408_liver | 0 .00 RPM | 77 .94 RPM |