RetrogeneDB ID: | retro_rnor_2394 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:115347806..115348325(-) | ||
Located in intron of: | ENSRNOG00000012332 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cetn2 | ||
Ensembl ID: | ENSRNOG00000017059 | ||
Aliases: | Cetn2, Calt | ||
Description: | Centrin 2, isoform CRA_a; Protein Cetn2 [Source:UniProtKB/TrEMBL;Acc:G3V9W0] |
Percent Identity: | 81.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MASNFKKTNM-ASSA--QRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDMKELKVAMRAL-GFEPKK |
.ASNFKKTN..ASS...QRK.M.PKPELTEEQKQEI.EAFDLFDADGTGTID.KEL.VAMR....FEPKK | |
Retrocopy | IASNFKKTNR<ASSEKIQRKTMNPKPELTEEQKQEIQEAFDLFDADGTGTIDIKEL*VAMRTV<AFEPKK |
Parental | EEIKK-MISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGE |
EEIKK.MISEIDKE.T.K.NFSD.LTVMTQ.MSEKDTKEEILKAFKL.DD.E.GK..F.NLK..AKELGE | |
Retrocopy | EEIKK<MISEIDKERTEKVNFSDSLTVMTQEMSEKDTKEEILKAFKLSDDNENGKMLFENLKCEAKELGE |
Parental | NLTDEELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY |
NLTDEELQEMIDEADRDGDGEV.EQEFL.I.KKTSL. | |
Retrocopy | NLTDEELQEMIDEADRDGDGEVSEQEFLCIVKKTSLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .68 RPM |
SRP017611_liver | 0 .00 RPM | 25 .42 RPM |