RetrogeneDB ID: | retro_ocun_180 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:61775002..61775521(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000009188 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.31 % |
Parental protein coverage: | 90.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKGNITSSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK |
MAS.FKK.N....SQRK...PKPELTE.QKQE.REAFDLFDADG.GTIDVKELKVAMRALGFEP.KEEIK | |
Retrocopy | MASSFKKPNSAPASQRKKSGPKPELTEDQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEIK |
Parental | KMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
KMISE.DKEGTGK..F.DFL.VMTQKM.EKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE | |
Retrocopy | KMISEVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDE |
Parental | ELQ |
ELQ | |
Retrocopy | ELQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 72 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .12 RPM |
SRP017611_liver | 0 .00 RPM | 16 .88 RPM |