RetrogeneDB ID: | retro_sscr_57 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL892891.1:45376..45895(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000028613 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN2 | ||
Ensembl ID: | ENSSSCG00000012757 | ||
Aliases: | None | ||
Description: | centrin, EF-hand protein, 2 [Source:HGNC Symbol;Acc:1867] |
Percent Identity: | 84.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKTNVASAAQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK |
MAS.FKK..VAS..Q.....PKPELTE.QKQE.REAFDLFDADG.GTIDVKELKVAMRALGFEP.KEE.K | |
Retrocopy | MASSFKKPQVASTSQKRKVGPKPELTEDQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMK |
Parental | KMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
.MISE.DKEGTGK..F.DFL.VMTQKM.EKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE | |
Retrocopy | RMISEVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDE |
Parental | ELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY |
ELQEMIDEADRDGDGEVNE.EFLRIMKKT.LY | |
Retrocopy | ELQEMIDEADRDGDGEVNEEEFLRIMKKTNLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .96 RPM |
SRP014902_testis | 0 .57 RPM | 29 .99 RPM |
SRP018288_heart | 0 .00 RPM | 33 .71 RPM |
SRP018288_kidney | 0 .00 RPM | 44 .33 RPM |
SRP018288_liver | 0 .00 RPM | 35 .50 RPM |
SRP018288_lung | 0 .00 RPM | 54 .99 RPM |
SRP018856_adipose | 0 .00 RPM | 50 .47 RPM |
SRP035408_brain | 0 .00 RPM | 72 .73 RPM |
SRP035408_liver | 0 .00 RPM | 77 .94 RPM |