RetrogeneDB ID: | retro_cfam_199 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:67431080..67431599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000018336 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019170 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.88 % |
Parental protein coverage: | 84.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKASMASSAQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK |
MAS.FKK...AS..Q.....PKPELTE.QKQE.REAFDLFDADG.GTIDVKELKVAMRALGFEP.KEE.K | |
Retrocopy | MASGFKKSNVASTSQKRKVGPKPELTEDQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMK |
Parental | KMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
KMISE.DKEGTGK..F.DFL.VMTQKM.EKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE | |
Retrocopy | KMISEVDKEGTGKISFNDFLGVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVAVELGENLTDE |
Parental | ELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY |
ELQEMIDEADRDGDGEVNE.EFLRIMKKT.LY | |
Retrocopy | ELQEMIDEADRDGDGEVNEEEFLRIMKKTNLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 47 .33 RPM |
SRP017611_brain | 0 .00 RPM | 34 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 115 .57 RPM |
SRP017611_liver | 0 .00 RPM | 17 .55 RPM |