Parental gene:

CETN2, ENSSSCG00000012757

Aliases:None
Description:centrin, EF-hand protein, 2 [Source:HGNC Symbol;Acc:1867]
Organism:Pig (Sus scrofa)
Coordinates:X:141372858..141376620(-)


>ENSSSCG00000012757
ATGGCCTCTAACTTTAAGAAGACAAACGTGGCATCTGCTGCCCAGCGAAAAAGGATGAGCCCTAAACCAGAGCTTACTGA
AGAGCAGAAACAGGAAATCCGAGAAGCTTTTGATCTCTTTGATGCTGATGGAACTGGGACAATAGATGTTAAAGAACTTA
AGGTGGCAATGAGGGCACTGGGCTTTGAACCCAAGAAAGAAGAGATCAAGAAAATGATAAGTGAAATCGATAAGGAAGGG
ACAGGAAAAATGAACTTCAGTGACTTTTTAACTGTGATGACTCAGAAAATGTCTGAGAAGGATACCAAAGAAGAAATCCT
GAAAGCTTTCAAGCTCTTCGATGACGATGAAACTGGGAAGATATCGTTCAAGAATCTAAAACGCGTGGCCAAGGAGTTGG
GCGAGAACCTCACTGACGAGGAGCTGCAGGAAATGATTGATGAAGCTGATCGCGATGGGGACGGAGAAGTCAATGAGCAA
GAGTTCCTGCGCATCATGAAGAAGACCAGTCTTTATTAA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .96 RPM
SRP014902_testis 29 .99 RPM
SRP018288_heart 33 .71 RPM
SRP018288_kidney 44 .33 RPM
SRP018288_liver 35 .50 RPM
SRP018288_lung 54 .99 RPM
SRP018856_adipose 50 .47 RPM
SRP035408_brain 72 .73 RPM
SRP035408_liver 77 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000364 ortholog_one2one 1 retrogene
retro_amel_56,
Bos taurus ENSBTAG00000007844 ortholog_one2one 1 retrogene
retro_btau_170,
Canis familiaris ENSCAFG00000019170 ortholog_one2many 1 retrogene
retro_cfam_199,
Choloepus hoffmanni ENSCHOG00000010244 ortholog_one2one 1 retrogene
retro_chof_39,
Callithrix jacchus ENSCJAG00000016338 ortholog_one2many 3 retrogenes
retro_cjac_106, retro_cjac_185, retro_cjac_316,
Cavia porcellus ENSCPOG00000012081 ortholog_one2many 2 retrogenes
retro_cpor_1250, retro_cpor_21,
Equus caballus ENSECAG00000000796 ortholog_one2one 1 retrogene
retro_ecab_49,
Felis catus ENSFCAG00000004901 ortholog_one2one 1 retrogene
retro_fcat_47,
Homo sapiens ENSG00000147400 ortholog_one2one 1 retrogene
retro_hsap_71,
Gorilla gorilla ENSGGOG00000011378 ortholog_one2one 1 retrogene
retro_ggor_74,
Loxodonta africana ENSLAFG00000014424 ortholog_one2one 1 retrogene
retro_lafr_121,
Microcebus murinus ENSMICG00000005862 ortholog_one2one 2 retrogenes
retro_mmur_122, retro_mmur_21,
Myotis lucifugus ENSMLUG00000014520 possible_ortholog 2 retrogenes
retro_mluc_320, retro_mluc_370,
Macaca mulatta ENSMMUG00000020743 ortholog_one2one 2 retrogenes
retro_mmul_1127, retro_mmul_176,
Mustela putorius furo ENSMPUG00000011858 ortholog_one2one 1 retrogene
retro_mputfur_386,
Mus musculus ENSMUSG00000031347 ortholog_one2one 2 retrogenes
retro_mmus_107, retro_mmus_838,
Nomascus leucogenys ENSNLEG00000013860 ortholog_one2one 1 retrogene
retro_nleu_1221,
Oryctolagus cuniculus ENSOCUG00000007897 ortholog_one2many 1 retrogene
retro_ocun_180,
Otolemur garnettii ENSOGAG00000005301 ortholog_one2many 1 retrogene
retro_ogar_236,
Procavia capensis ENSPCAG00000003203 ortholog_one2many 1 retrogene
retro_pcap_149,
Procavia capensis ENSPCAG00000007778 ortholog_one2many 1 retrogene
retro_pcap_364,
Pongo abelii ENSPPYG00000020833 ortholog_one2one 1 retrogene
retro_pabe_58,
Pan troglodytes ENSPTRG00000022389 ortholog_one2one 1 retrogene
retro_ptro_108,
Rattus norvegicus ENSRNOG00000017059 ortholog_one2one 5 retrogenes
retro_rnor_2376, retro_rnor_2394, retro_rnor_2920, retro_rnor_304, retro_rnor_775,
Ictidomys tridecemlineatus ENSSTOG00000023853 ortholog_one2one 2 retrogenes
retro_itri_636, retro_itri_91,
Tarsius syrichta ENSTSYG00000003831 ortholog_one2one 2 retrogenes
retro_tsyr_1142, retro_tsyr_36,
Tursiops truncatus ENSTTRG00000001236 ortholog_one2one 2 retrogenes
retro_ttru_32, retro_ttru_335,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_57 84.88 100.00
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2. retro_sscr_822 73.58 61.63
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3. retro_sscr_1175 79.38 55.81
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Download FASTA sequences of all ENSSSCG00000012757 retrocopies