RetrogeneDB ID: | retro_ptro_108 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 18:16139263..16139782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000029345 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN2 | ||
Ensembl ID: | ENSPTRG00000022389 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK |
MAS.FKK...AS.SQ.....PKPELTE.QKQE.REAFDLFD.DG.GTIDVKELKVAMRALGFEP.KEE.K | |
Retrocopy | MASSFKKPSAASTSQKRKVVPKPELTEDQKQEVREAFDLFDVDGSGTIDVKELKVAMRALGFEPRKEEMK |
Parental | KMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE |
KMISE.DKEGTGK..F.DFL.VMTQKMSEKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE | |
Retrocopy | KMISEVDKEGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDE |
Parental | ELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY |
ELQEMIDEADRDGDGEV.E.EFLRIMKKTSLY | |
Retrocopy | ELQEMIDEADRDGDGEVNEEEFLRIMKKTSLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 27 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .50 RPM |
SRP007412_heart | 0 .20 RPM | 18 .27 RPM |
SRP007412_kidney | 0 .05 RPM | 45 .71 RPM |
SRP007412_liver | 0 .07 RPM | 14 .47 RPM |
SRP007412_testis | 468 .11 RPM | 35 .09 RPM |