RetrogeneDB ID:

retro_ttru_32

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_541:354697..355216(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTTRG00000016667
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CETN2
Ensembl ID:ENSTTRG00000001236
Aliases:None
Description:centrin, EF-hand protein, 2 [Source:HGNC Symbol;Acc:1867]


Retrocopy-Parental alignment summary:






>retro_ttru_32
ATGGCTTCCAGCTTCAAGAAGTCAAACGTGGCCTCCACCAGCCAGAAAAGAAAGGTGGAGCCTAAGCCCGAGCTCACTGA
AGATCAGAAGCAAGAAATTCGCGAAGCGTTTGCCCTCTTCGATGCCGACGGCAGCGGCACCATCGACGTGAAGGAGCTGA
AGGTGGCCTTGAGGGCACTGGGCTTTGAACCCAGGAAGGAGGAGATGAAGAGGATAATCGCCGAGGTGGACAAGGAAAGC
ACAGGGAAAGTCAGCTTCAATGACTTCTTGGCTGTGATGACTCAGAAGATGGCCGAGAAAGACACCAAGGAAGAAATCCT
GAAGGCTTTCAGGCTCTTTGATGATGATGAAACCGGGAAGATCTCTTTCAAAAACCTAAAGCGCGTGGCCACCGAGTTGG
GGGAAAACCTCACTGATGAGGAGCTGCAGGAAATGATTGACGAAGCAGATCGGGATGGAGACGGTGAAGTGAACGAGGAA
GAGTTTCTTCGGATCATGAAAAAGACCAGCCTCTACTGA

ORF - retro_ttru_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.72 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASNFKKANMASTAQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIK
MAS.FKK.N.AST.Q.....PKPELTE.QKQEIREAF.LFDADG.GTIDVKELKVA.RALGFEP.KEE.K
RetrocopyMASSFKKSNVASTSQKRKVEPKPELTEDQKQEIREAFALFDADGSGTIDVKELKVALRALGFEPRKEEMK
ParentalKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE
..I.E.DKE.TGK..F.DFL.VMTQKM.EKDTKEEILKAF.LFDDDETGKISFKNLKRVA.ELGENLTDE
RetrocopyRIIAEVDKESTGKVSFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVATELGENLTDE
ParentalELQEMIDEADRDGDGEVNEHEFLRIMKKTSLY
ELQEMIDEADRDGDGEVNE.EFLRIMKKTSLY
RetrocopyELQEMIDEADRDGDGEVNEEEFLRIMKKTSLY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_32 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_32 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 44 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000003641 retrocopy
Bos taurus ENSBTAG000000078441 retrocopy
Canis familiaris ENSCAFG000000191701 retrocopy
Choloepus hoffmanni ENSCHOG000000102441 retrocopy
Callithrix jacchus ENSCJAG000000163383 retrocopies
Cavia porcellus ENSCPOG000000120812 retrocopies
Equus caballus ENSECAG000000007961 retrocopy
Felis catus ENSFCAG000000049011 retrocopy
Homo sapiens ENSG000001474001 retrocopy
Gorilla gorilla ENSGGOG000000113781 retrocopy
Loxodonta africana ENSLAFG000000144241 retrocopy
Microcebus murinus ENSMICG000000058622 retrocopies
Myotis lucifugus ENSMLUG000000145202 retrocopies
Macaca mulatta ENSMMUG000000207432 retrocopies
Mustela putorius furoENSMPUG000000118581 retrocopy
Mus musculus ENSMUSG000000313472 retrocopies
Nomascus leucogenys ENSNLEG000000138601 retrocopy
Oryctolagus cuniculus ENSOCUG000000078971 retrocopy
Otolemur garnettii ENSOGAG000000053011 retrocopy
Procavia capensis ENSPCAG000000032031 retrocopy
Procavia capensis ENSPCAG000000077781 retrocopy
Pongo abelii ENSPPYG000000208331 retrocopy
Pan troglodytes ENSPTRG000000223891 retrocopy
Rattus norvegicus ENSRNOG000000170595 retrocopies
Sus scrofa ENSSSCG000000127573 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000238532 retrocopies
Tarsius syrichta ENSTSYG000000038312 retrocopies
Tursiops truncatus ENSTTRG00000001236 2 retrocopies
retro_ttru_32 , retro_ttru_335,



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