RetrogeneDB ID: | retro_hsap_929 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:115409586..115410102(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000257087 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTL | ||
Ensembl ID: | ENSG00000087086 | ||
Aliases: | FTL, LFTD, NBIA3 | ||
Description: | ferritin, light polypeptide [Source:HGNC Symbol;Acc:3999] |
Percent Identity: | 67.23 % |
Parental protein coverage: | 99.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SSQIRQNYSTDVEAAVNSLVNLYLQASYTY-LSLGFYFDRDDVALEGVSHFFRELAEEKR-EGYERLLKM |
SSQI.QNYSTDVEAA.N.LVNL...AS.T..LSLGF....DDVALE.V.HF..EL..EK.......LLK. | |
Retrocopy | SSQIHQNYSTDVEAATNLLVNLHQ*ASSTH<LSLGFCLHHDDVALEAVGHFY-ELDKEKH<RSSKHLLKI |
Parental | QNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHL-CDFLETHFLDEE |
QNQ.G..A.FQDI.K...DEWGKT.DAM.AA.ALEKKLNQ.LLDLH.LGSA.TD.H...DFLE.HFL.EE | |
Retrocopy | QNQCGSSAVFQDIHKSPQDEWGKTLDAMGAATALEKKLNQGLLDLHVLGSAHTDLHI<LDFLESHFLNEE |
Parental | VKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD |
VKLIKK...HLTNL.RL.GP.A.LG..LF.RLTL.HD | |
Retrocopy | VKLIKKVDNHLTNLDRLTGPQARLGKFLFQRLTLRHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1863 .91 RPM |
bodymap2_adrenal | 0 .00 RPM | 1058 .95 RPM |
bodymap2_brain | 0 .00 RPM | 272 .02 RPM |
bodymap2_breast | 0 .00 RPM | 1738 .93 RPM |
bodymap2_colon | 0 .00 RPM | 670 .92 RPM |
bodymap2_heart | 0 .00 RPM | 243 .78 RPM |
bodymap2_kidney | 0 .00 RPM | 1729 .69 RPM |
bodymap2_liver | 0 .00 RPM | 2015 .73 RPM |
bodymap2_lung | 0 .00 RPM | 2849 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1616 .52 RPM |
bodymap2_ovary | 0 .00 RPM | 779 .67 RPM |
bodymap2_prostate | 0 .00 RPM | 1402 .23 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 372 .14 RPM |
bodymap2_testis | 0 .00 RPM | 363 .05 RPM |
bodymap2_thyroid | 0 .00 RPM | 908 .10 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1684 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_645 |
Gorilla gorilla | retro_ggor_750 |
Pongo abelii | retro_pabe_800 |
Macaca mulatta | retro_mmul_1125 |
Callithrix jacchus | retro_cjac_889 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |