RetrogeneDB ID:

retro_ggor_2039

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:76552553..76552973(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FTL
Ensembl ID:ENSGGOG00000011999
Aliases:None
Description:Ferritin [Source:UniProtKB/TrEMBL;Acc:G3R8I9]


Retrocopy-Parental alignment summary:






>retro_ggor_2039
ATGAGTTCCCACATCAGCCAGAATTACTGCACCGAAGTGGAAGCCGCCGTCAGCAGCCTGGTCAACCGGCAGCTGCGGGC
TTCCCTTACCTACCTCTCTCTCATCCTCCATTTCCACCGTGACGACGTCGCCCTGGAGGGCATGGGCCACTTCTTCTGAG
AGCTGGCCCAGGAGAAGCGACAGGGCGCCCAGAGTCTGTGGAAGACGCAAAACCAGCGCGGAGCCCTCTGCGATGCCATC
CAGAAGCCGTCCTGGGATGAATAGGACAGCAGTTTGGGCGCCCTGCGAGCCGCGTTGGCCCTGGAGACGAACCTGAACCA
GGCCCTGCTGGATCTGCACGCCCTGGGCGCAAAGCATGCAGACTCTCACCTCTGTGGCTTCCTGGAGAACCACTTCCTAG
GCCGCGAACGGAAACTCATC

ORF - retro_ggor_2039 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.38 %
Parental protein coverage: 81.14 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQ
MSS.I.QNY.T.VEAAV.SLVN..L.AS.TYLSL...F.RDDVALEG..HFF.ELA.EKR.G...L.K.Q
RetrocopyMSSHISQNYCTEVEAAVSSLVNRQLRASLTYLSLILHFHRDDVALEGMGHFF*ELAQEKRQGAQSLWKTQ
ParentalNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVK
NQRG..AL...I.KP..DE......A..AA.ALE..LNQALLDLHALG....D.HLC.FLE.HFL..E.K
RetrocopyNQRG--ALCDAIQKPSWDE*DSSLGALRAALALETNLNQALLDLHALGAKHADSHLCGFLENHFLGRERK
ParentalLI
LI
RetrocopyLI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 227 .97 RPM
SRP007412_cerebellum 0 .00 RPM 153 .77 RPM
SRP007412_heart 0 .00 RPM 154 .54 RPM
SRP007412_kidney 0 .00 RPM 1629 .18 RPM
SRP007412_liver 0 .00 RPM 2209 .68 RPM
SRP007412_testis 0 .10 RPM 277 .75 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2039 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2039 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2942
Pan troglodytes retro_ptro_2055
Pongo abelii retro_pabe_2514

Parental genes homology:
Parental genes homology involve 35 parental genes, and 537 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001458227 retrocopies
Bos taurus ENSBTAG0000001334333 retrocopies
Canis familiaris ENSCAFG000000038611 retrocopy
Callithrix jacchus ENSCJAG0000000025013 retrocopies
Cavia porcellus ENSCPOG000000205581 retrocopy
Dasypus novemcinctus ENSDNOG000000024559 retrocopies
Dasypus novemcinctus ENSDNOG000000041265 retrocopies
Dasypus novemcinctus ENSDNOG0000000557736 retrocopies
Dasypus novemcinctus ENSDNOG000000078482 retrocopies
Dasypus novemcinctus ENSDNOG000000166838 retrocopies
Dipodomys ordii ENSDORG000000155505 retrocopies
Felis catus ENSFCAG0000000334837 retrocopies
Homo sapiens ENSG0000008708611 retrocopies
Gorilla gorilla ENSGGOG00000011999 9 retrocopies
Gorilla gorilla ENSGGOG000000277227 retrocopies
Loxodonta africana ENSLAFG0000003124811 retrocopies
Microcebus murinus ENSMICG000000018617 retrocopies
Macaca mulatta ENSMMUG000000039099 retrocopies
Mustela putorius furoENSMPUG0000000330429 retrocopies
Mus musculus ENSMUSG000000507081 retrocopy
Nomascus leucogenys ENSNLEG0000000471610 retrocopies
Oryctolagus cuniculus ENSOCUG000000000146 retrocopies
Ochotona princeps ENSOPRG0000000249210 retrocopies
Procavia capensis ENSPCAG000000132276 retrocopies
Pongo abelii ENSPPYG0000001022311 retrocopies
Pan troglodytes ENSPTRG0000001126811 retrocopies
Pteropus vampyrus ENSPVAG0000000957025 retrocopies
Rattus norvegicus ENSRNOG000000208437 retrocopies
Sorex araneus ENSSARG0000001174112 retrocopies
Sus scrofa ENSSSCG0000000315333 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000206397 retrocopies
Tupaia belangeri ENSTBEG0000000531113 retrocopies
Tarsius syrichta ENSTSYG0000001398856 retrocopies
Tursiops truncatus ENSTTRG0000000125266 retrocopies
Vicugna pacos ENSVPAG000000055093 retrocopies



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