Parental gene:

MMU.17965, ENSMMUG00000003909

Aliases:None
Description:ferritin light chain [Source:RefSeq peptide;Acc:NP_001248136]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:19:55247872..55249766(+)


>ENSMMUG00000003909
ATGAGCTCCCAGATTCGTCAGAATTATTCCACCGACGTGGAGGCAGCCGTCAACAGCCTGGTCAATATGTACCTGCAGGC
CTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCTGGAAGGCGTGAGCCACTTCTTCCGCG
AATTGGCCGAGGAGAAGCGCGAGGGCTACGAGCGTCTCCTGAAGATGCAAAACCAGCGTGGCGGCCGCGCTCTTTTTCAG
GACGTCAAGAAGCCAGCTGAAGATGAGTGGGGTAAAACCCCGGATGCCATGAAAGCCGCCATGGCCCTGGAGAAAAAACT
GAATCAGGCCCTTTTGGATCTTCATGCCCTGGGTTCTGCCCACACGGATCCCCATCTCTGTGACTTCCTGGAGACTCACT
TCCTAGATGAGGAAGTGAAGCTCATCAAAAAGATGGGTGACCACCTGACCAACCTCAACAGGCTGGCCGGCCCGGAGGCT
GGGCTGGGCGAGTATCTCTTCGAAAGGCTCACTCTCAAGCACGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 161 .91 RPM
SRP007412_brain 24 .09 RPM
SRP007412_cerebellum 14 .59 RPM
SRP007412_heart 30 .09 RPM
SRP007412_kidney 182 .98 RPM
SRP007412_liver 379 .25 RPM
SRP007412_testis 20 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014582 possible_ortholog 27 retrogenes
Bos taurus ENSBTAG00000013343 possible_ortholog 33 retrogenes
Canis familiaris ENSCAFG00000003861 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000000250 ortholog_many2many 13 retrogenes
Cavia porcellus ENSCPOG00000020558 possible_ortholog 1 retrogene
Dasypus novemcinctus ENSDNOG00000002455 possible_ortholog 9 retrogenes
Dasypus novemcinctus ENSDNOG00000004126 possible_ortholog 5 retrogenes
Dasypus novemcinctus ENSDNOG00000005577 possible_ortholog 36 retrogenes
Dasypus novemcinctus ENSDNOG00000007848 possible_ortholog 2 retrogenes
Dasypus novemcinctus ENSDNOG00000016683 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000015550 possible_ortholog 5 retrogenes
Felis catus ENSFCAG00000003348 possible_ortholog 37 retrogenes
Homo sapiens ENSG00000087086 ortholog_one2one 11 retrogenes
Gorilla gorilla ENSGGOG00000011999 ortholog_one2many 9 retrogenes
Loxodonta africana ENSLAFG00000031248 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000001861 possible_ortholog 7 retrogenes
Mustela putorius furo ENSMPUG00000003304 possible_ortholog 29 retrogenes
Mus musculus ENSMUSG00000050708 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000004716 ortholog_one2one 10 retrogenes
Oryctolagus cuniculus ENSOCUG00000000014 possible_ortholog 6 retrogenes
Ochotona princeps ENSOPRG00000002492 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000013227 possible_ortholog 6 retrogenes
Pongo abelii ENSPPYG00000010223 ortholog_one2one 11 retrogenes
Pan troglodytes ENSPTRG00000011268 ortholog_one2many 11 retrogenes
Pteropus vampyrus ENSPVAG00000009570 possible_ortholog 25 retrogenes
Rattus norvegicus ENSRNOG00000020843 possible_ortholog 7 retrogenes
Sorex araneus ENSSARG00000011741 possible_ortholog 12 retrogenes
Sus scrofa ENSSSCG00000003153 possible_ortholog 33 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000020639 possible_ortholog 7 retrogenes
Tupaia belangeri ENSTBEG00000005311 possible_ortholog 13 retrogenes
Tarsius syrichta ENSTSYG00000013988 possible_ortholog 56 retrogenes
Tursiops truncatus ENSTTRG00000001252 possible_ortholog 66 retrogenes
Vicugna pacos ENSVPAG00000005509 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_481 87.58 92.00
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2. retro_mmul_518 68.80 70.86
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3. retro_mmul_989 99.43 100.00
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4. retro_mmul_1051 66.46 93.71
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5. retro_mmul_1125 68.54 99.43
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6. retro_mmul_1508 99.43 100.00
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7. retro_mmul_1569 71.54 70.29
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8. retro_mmul_1617 66.01 86.86
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9. retro_mmul_1950 56.49 88.00
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Download FASTA sequences of all ENSMMUG00000003909 retrocopies