Parental gene:

FTL, ENSBTAG00000013343

Aliases:None
Description:Ferritin light chain [Source:UniProtKB/Swiss-Prot;Acc:O46415]
Organism:Cow (Bos taurus)
Coordinates:18:55992909..55994741(+)


>ENSBTAG00000013343
ATGAGCTCCCAGATTCGTCAGAATTATTCTACCGAGGTGGAGGCCGCCGTCAACCGCCTGGTTAACATGCAACTGCGGGC
CTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGACGATGTGGCCCTGGAGGGTGTGGGTCACTTTTTTCGCG
AATTGGCCAAGGAGAAGCGCGAGGGCGCGGAGCGTCTCTTGAAACTGCAAAACCAGCGTGGCGGCCGCGCCCTCTTCCTG
GACGTGCAGAAGCCATCTCAAGATGAGTGGGGTAAAACCCAGGACGCTATGGAGGCCGCCCTTCTCGTAGAGAAGAACCT
GAATCAAGCCCTGTTGGATCTGCATGGCCTGGCTTCTGCCCGCGGAGACCCCCACATCTGTGACTTCCTGGAGAACCACT
TCCTAGATGAGGAAGTGAAACTCATCAAGAAGATGGGTGACCATCTGACCAACCTCCGCAGGCTGGCTGGTCCCCAGGCT
GGGTTGGGCGAGTATCTCTTCGAAAGGCTCACCCTCAAGCACGACTAG

Library Parental gene expression (RPM)
SRP017611_brain 125 .16 RPM
SRP017611_kidney 646 .36 RPM
SRP017611_liver 1119 .34 RPM
ERP005899_muscle 611 .77 RPM
ERP005899_liver 390 .62 RPM
SRP030211_testis 141 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014582 possible_ortholog 27 retrogenes
Bos taurus ENSBTAG00000011184 other_paralog 10 retrogenes
Canis familiaris ENSCAFG00000003861 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000000250 possible_ortholog 13 retrogenes
Cavia porcellus ENSCPOG00000020558 possible_ortholog 1 retrogene
Dasypus novemcinctus ENSDNOG00000002455 possible_ortholog 9 retrogenes
Dasypus novemcinctus ENSDNOG00000004126 possible_ortholog 5 retrogenes
Dasypus novemcinctus ENSDNOG00000005577 possible_ortholog 36 retrogenes
Dasypus novemcinctus ENSDNOG00000007848 possible_ortholog 2 retrogenes
Dasypus novemcinctus ENSDNOG00000016683 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000015550 ortholog_one2many 5 retrogenes
Felis catus ENSFCAG00000003348 ortholog_many2many 37 retrogenes
Homo sapiens ENSG00000087086 possible_ortholog 11 retrogenes
Gorilla gorilla ENSGGOG00000011999 possible_ortholog 9 retrogenes
Loxodonta africana ENSLAFG00000031248 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000001861 ortholog_one2many 7 retrogenes
Macaca mulatta ENSMMUG00000003909 possible_ortholog 9 retrogenes
Mustela putorius furo ENSMPUG00000003304 possible_ortholog 29 retrogenes
Mus musculus ENSMUSG00000050708 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000004716 possible_ortholog 10 retrogenes
Oryctolagus cuniculus ENSOCUG00000000014 possible_ortholog 6 retrogenes
Ochotona princeps ENSOPRG00000002492 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000013227 possible_ortholog 6 retrogenes
Pongo abelii ENSPPYG00000010223 possible_ortholog 11 retrogenes
Pan troglodytes ENSPTRG00000011268 possible_ortholog 11 retrogenes
Pteropus vampyrus ENSPVAG00000009570 ortholog_one2many 25 retrogenes
Rattus norvegicus ENSRNOG00000020843 possible_ortholog 7 retrogenes
Sorex araneus ENSSARG00000011741 ortholog_one2many 12 retrogenes
Sus scrofa ENSSSCG00000003153 ortholog_many2many 33 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000020639 ortholog_many2many 7 retrogenes
Tupaia belangeri ENSTBEG00000005311 possible_ortholog 13 retrogenes
Tarsius syrichta ENSTSYG00000013988 ortholog_one2many 56 retrogenes
Tursiops truncatus ENSTTRG00000001252 ortholog_one2many 66 retrogenes
Vicugna pacos ENSVPAG00000005509 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_250 96.59 100.00
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2. retro_btau_301 92.57 100.00
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3. retro_btau_339 59.12 77.14
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4. retro_btau_340 63.31 78.29
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5. retro_btau_419 73.00 56.00
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6. retro_btau_422 82.58 74.86
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7. retro_btau_520 95.43 100.00
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8. retro_btau_597 60.13 86.29
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9. retro_btau_639 50.48 60.00
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10. retro_btau_649 66.48 100.00
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11. retro_btau_938 63.37 97.14
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12. retro_btau_963 96.57 100.00
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13. retro_btau_993 53.46 87.43
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14. retro_btau_998 54.89 74.86
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15. retro_btau_1007 71.75 100.00
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16. retro_btau_1011 61.45 100.00
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17. retro_btau_1033 100.00 100.00
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18. retro_btau_1197 72.26 88.00
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19. retro_btau_1209 65.29 67.43
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20. retro_btau_1277 74.29 100.00
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21. retro_btau_1354 73.30 98.86
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22. retro_btau_1396 50.53 52.57
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23. retro_btau_1452 61.31 94.86
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24. retro_btau_1464 68.00 69.71
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25. retro_btau_1466 76.00 70.86
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26. retro_btau_1481 60.56 99.43
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27. retro_btau_1511 97.71 100.00
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28. retro_btau_1540 93.18 100.00
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29. retro_btau_1561 88.57 99.43
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30. retro_btau_1683 82.49 100.00
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31. retro_btau_1781 66.67 60.57
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32. retro_btau_1798 60.68 66.29
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33. retro_btau_1848 90.96 100.00
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Download FASTA sequences of all ENSBTAG00000013343 retrocopies