Parental gene:

ENSSTOG00000020639

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393474.1:2976529..2977708(+)


>ENSSTOG00000020639
ATGACCTCCCAGATTCGTCAGAATTATTCCACCGAGGTGGAGGCTGCCGTCAACCGCCTGGTTAATTTGCATTTGTGCGC
CTCCTACACCTACCTCTCTCTGGGCTACTATTTCGACCGTGACGATGTGGCTCTGGAGGGCGTGGGCCACTTCTTCCGCG
AGTTGGCTGAGGAAAAGCGCGAGGCCTCCGAGCGTCTCCTCAAGATGCAAAACCAGCGCGGCGGCCGCGCCCTCTTCCAG
GACGTGCAGAAACCTTCTCAAGATGAGTGGGGCAACACCCTGGACGCCATGGAAGCTGCCTTGGCTCTGGAGAAGAACCT
GAACCAAGCCATTTTGGATCTTCATGCCTTGGGTTCTACCCGCACAGACCCACATCTCTGTGACTTTCTGGAGAACCACT
TCCTTGATGAGGAGGTGAAGCTCATCAAGAAGATGGGGGACCACTTGACTAACCTCCACCGTCTGGCGGGCCCCCAGGCT
GGCCTGGGCGAGTATCTCTTTGAAAGACTCACCCTCAAGCCTGAC

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014582 possible_ortholog 27 retrogenes
Bos taurus ENSBTAG00000013343 ortholog_many2many 33 retrogenes
Canis familiaris ENSCAFG00000003861 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000000250 possible_ortholog 13 retrogenes
Cavia porcellus ENSCPOG00000020558 possible_ortholog 1 retrogene
Dasypus novemcinctus ENSDNOG00000002455 possible_ortholog 9 retrogenes
Dasypus novemcinctus ENSDNOG00000004126 possible_ortholog 5 retrogenes
Dasypus novemcinctus ENSDNOG00000005577 possible_ortholog 36 retrogenes
Dasypus novemcinctus ENSDNOG00000007848 possible_ortholog 2 retrogenes
Dasypus novemcinctus ENSDNOG00000016683 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000015550 ortholog_one2many 5 retrogenes
Felis catus ENSFCAG00000003348 ortholog_many2many 37 retrogenes
Homo sapiens ENSG00000087086 possible_ortholog 11 retrogenes
Gorilla gorilla ENSGGOG00000011999 possible_ortholog 9 retrogenes
Loxodonta africana ENSLAFG00000031248 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000001861 ortholog_one2many 7 retrogenes
Macaca mulatta ENSMMUG00000003909 possible_ortholog 9 retrogenes
Mustela putorius furo ENSMPUG00000003304 possible_ortholog 29 retrogenes
Mus musculus ENSMUSG00000050708 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000004716 possible_ortholog 10 retrogenes
Oryctolagus cuniculus ENSOCUG00000000014 possible_ortholog 6 retrogenes
Ochotona princeps ENSOPRG00000002492 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000013227 possible_ortholog 6 retrogenes
Pongo abelii ENSPPYG00000010223 possible_ortholog 11 retrogenes
Pan troglodytes ENSPTRG00000011268 possible_ortholog 11 retrogenes
Pteropus vampyrus ENSPVAG00000009570 ortholog_one2many 25 retrogenes
Rattus norvegicus ENSRNOG00000020843 possible_ortholog 7 retrogenes
Sorex araneus ENSSARG00000011741 ortholog_one2many 12 retrogenes
Sus scrofa ENSSSCG00000003153 ortholog_many2many 33 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000014521 other_paralog 1 retrogene
Tupaia belangeri ENSTBEG00000005311 possible_ortholog 13 retrogenes
Tarsius syrichta ENSTSYG00000013988 ortholog_one2many 56 retrogenes
Tursiops truncatus ENSTTRG00000001252 ortholog_one2many 66 retrogenes
Vicugna pacos ENSVPAG00000005509 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_24 67.63 98.86
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2. retro_itri_355 52.85 70.29
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3. retro_itri_719 69.84 72.00
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4. retro_itri_741 88.14 100.00
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5. retro_itri_1606 76.23 67.43
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6. retro_itri_1701 74.07 74.29
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7. retro_itri_1857 95.04 69.14
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Download FASTA sequences of all ENSSTOG00000020639 retrocopies