RetrogeneDB ID: | retro_hsap_1243 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:23270164..23270701(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232187 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSG00000167996 | ||
Aliases: | FTH1, FHC, FTH, FTHL6, HFE5, PIG15, PLIF | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 94.97 % |
Parental protein coverage: | 97.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | STSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQ |
S.SQVRQN.HQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLM.LQ | |
Retrocopy | SASQVRQNSHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMELQ |
Parental | NQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVK |
NQ.GG.IFLQDIKKPDCDDWES.LNA.ECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVK | |
Retrocopy | NQLGG*IFLQDIKKPDCDDWESRLNATECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVK |
Parental | AIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
AIKELGD.VTNLRKMGAPESGLAEYLFDKH.LGDSDNES | |
Retrocopy | AIKELGDQVTNLRKMGAPESGLAEYLFDKHILGDSDNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .44 RPM | 416 .48 RPM |
bodymap2_adrenal | 0 .16 RPM | 130 .06 RPM |
bodymap2_brain | 0 .42 RPM | 173 .50 RPM |
bodymap2_breast | 0 .60 RPM | 294 .30 RPM |
bodymap2_colon | 0 .25 RPM | 231 .41 RPM |
bodymap2_heart | 0 .50 RPM | 98 .19 RPM |
bodymap2_kidney | 1 .30 RPM | 318 .29 RPM |
bodymap2_liver | 0 .19 RPM | 82 .81 RPM |
bodymap2_lung | 0 .33 RPM | 442 .70 RPM |
bodymap2_lymph_node | 0 .09 RPM | 156 .57 RPM |
bodymap2_ovary | 0 .46 RPM | 138 .99 RPM |
bodymap2_prostate | 0 .29 RPM | 201 .36 RPM |
bodymap2_skeletal_muscle | 0 .56 RPM | 168 .11 RPM |
bodymap2_testis | 0 .08 RPM | 132 .46 RPM |
bodymap2_thyroid | 0 .26 RPM | 215 .64 RPM |
bodymap2_white_blood_cells | 0 .26 RPM | 268 .25 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_31983 | 187 libraries | 342 libraries | 749 libraries | 222 libraries | 329 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .19 RPM |
CEU_NA11843 | 0 .20 RPM |
CEU_NA11930 | 0 .20 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .32 RPM |
CEU_NA12751 | 0 .10 RPM |
CEU_NA12760 | 0 .31 RPM |
CEU_NA12827 | 0 .33 RPM |
CEU_NA12872 | 0 .22 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .16 RPM |
FIN_HG00277 | 0 .41 RPM |
FIN_HG00315 | 0 .22 RPM |
FIN_HG00321 | 0 .27 RPM |
FIN_HG00328 | 0 .24 RPM |
FIN_HG00338 | 0 .23 RPM |
FIN_HG00349 | 0 .43 RPM |
FIN_HG00375 | 0 .20 RPM |
FIN_HG00377 | 0 .33 RPM |
FIN_HG00378 | 0 .19 RPM |
GBR_HG00099 | 0 .35 RPM |
GBR_HG00111 | 0 .24 RPM |
GBR_HG00114 | 0 .21 RPM |
GBR_HG00119 | 0 .19 RPM |
GBR_HG00131 | 0 .49 RPM |
GBR_HG00133 | 0 .29 RPM |
GBR_HG00134 | 0 .24 RPM |
GBR_HG00137 | 0 .27 RPM |
GBR_HG00142 | 0 .36 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .25 RPM |
TSI_NA20513 | 0 .34 RPM |
TSI_NA20518 | 0 .44 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .37 RPM |
TSI_NA20756 | 0 .23 RPM |
TSI_NA20765 | 0 .25 RPM |
TSI_NA20771 | 0 .26 RPM |
TSI_NA20786 | 0 .13 RPM |
TSI_NA20798 | 0 .25 RPM |
YRI_NA18870 | 0 .37 RPM |
YRI_NA18907 | 0 .17 RPM |
YRI_NA18916 | 0 .15 RPM |
YRI_NA19093 | 0 .21 RPM |
YRI_NA19099 | 0 .32 RPM |
YRI_NA19114 | 0 .24 RPM |
YRI_NA19118 | 0 .29 RPM |
YRI_NA19213 | 0 .24 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .24 RPM |