RetrogeneDB ID: | retro_hsap_87 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:121187658..121188387(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000181867 | |
Aliases: | FTMT, MTF | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSG00000167996 | ||
Aliases: | FTH1, FHC, FTH, FTHL6, HFE5, PIG15, PLIF | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 80.56 % |
Parental protein coverage: | 98.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKL |
A..S.VRQN.H.DSEAAINRQINLELYASYVYLSM.YYF.RDDVAL.NF..YFLHQS.EE.EHAEKLM.L | |
Retrocopy | AGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRL |
Parental | QNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQV |
QNQRGGRI.LQDIKKP..DDWESGL.AMECAL.LEKNVNQSLLELH.LA.DK.DPHLCDF.ET.YLNEQV | |
Retrocopy | QNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQV |
Parental | KAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
K.IKELGDHV.NL.KMGAP..GLAEYLFD.HTLG...... | |
Retrocopy | KSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENKQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 416 .48 RPM |
bodymap2_adrenal | 0 .00 RPM | 130 .06 RPM |
bodymap2_brain | 0 .00 RPM | 173 .50 RPM |
bodymap2_breast | 0 .04 RPM | 294 .30 RPM |
bodymap2_colon | 0 .00 RPM | 231 .41 RPM |
bodymap2_heart | 0 .00 RPM | 98 .19 RPM |
bodymap2_kidney | 0 .00 RPM | 318 .29 RPM |
bodymap2_liver | 0 .00 RPM | 82 .81 RPM |
bodymap2_lung | 0 .00 RPM | 442 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 156 .57 RPM |
bodymap2_ovary | 0 .00 RPM | 138 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 201 .36 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 168 .11 RPM |
bodymap2_testis | 11 .56 RPM | 132 .46 RPM |
bodymap2_thyroid | 0 .00 RPM | 215 .64 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 268 .25 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_148073 | 1826 libraries | 0 libraries | 3 libraries | 0 libraries | 0 libraries |
TSS #2 | TSS_148074 | 1824 libraries | 2 libraries | 0 libraries | 0 libraries | 3 libraries |
TSS #3 | TSS_148075 | 1825 libraries | 1 library | 1 library | 2 libraries | 0 libraries |
TSS #4 | TSS_148076 | 1823 libraries | 3 libraries | 0 libraries | 1 library | 2 libraries |
TSS #5 | TSS_148077 | 1825 libraries | 2 libraries | 2 libraries | 0 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_35 |
Mus musculus | retro_mmus_45 |
Bos taurus | retro_btau_121 |
Sus scrofa | retro_sscr_78 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |