RetrogeneDB - Parental gene ENSSSCG00000003153 details

							
>ENSSSCG00000003153
ATGAGCTCCCAGGTTCGTCAGAATTATTCCACCGAGGTGGAGGCCTTCGTCAACCGCCTGATCAACATGCATCTGCAGGC

CTCCTACACCTACCTCTCTCTGGGCTTCTATTTCAACCGCGACGATGTGGCTCTGGAGGGCGTGAGTCATTTTTTTCGCG

AATTGGCCGAGGAGAAGCGCGAGGGTTCGGAGCGTCTCTTGAAAATGCAAAACCAGCGCGGTGGCCGCGCCCTCTTCCAG

GACGTGCAGAAACCATCTCAAGATGAGTGGGGTAAAACCCAGGACGCTATGGAAGCCGCCCTTCACTTGGAGAAGGGACT

GAACCAGGCTCTTGTGGATCTGCATGCGCTGGGTTCTGCCCGCGCAGACCCCCACCTCTGTGACTTCCTGGAGAACCACT

TCCTGGATGAGGAGGTGAAGCTCATCAAGAAGATGGGCGACCACCTGACCAACCTGCGCAGGCTCTCTGGTCCCCAGGCT

GGGCTGGGCGAGTACCTCTTCGAAAGGCTCACACTCAAGCACGACTAG

Library	Parental gene expression (RPM)
SRP014902_placenta	0 .00 RPM
SRP014902_testis	0 .00 RPM
SRP018856_adipose	0 .00 RPM
SRP018288_kidney	0 .00 RPM
SRP018288_lung	0 .00 RPM
SRP018288_liver	0 .00 RPM
SRP018288_heart	0 .00 RPM
SRP035408_liver	0 .00 RPM
SRP035408_brain	0 .00 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014582	possible_ortholog	27 retrogenes	retro_amel_1008, retro_amel_1182, retro_amel_1185, retro_amel_1218, retro_amel_1277, retro_amel_1342, retro_amel_1419, retro_amel_1549, retro_amel_1638, retro_amel_1642, retro_amel_1753, retro_amel_178, retro_amel_1784, retro_amel_1872, retro_amel_1925, retro_amel_202, retro_amel_220, retro_amel_250, retro_amel_348, retro_amel_52, retro_amel_580, retro_amel_614, retro_amel_624, retro_amel_650, retro_amel_698, retro_amel_861, retro_amel_907,
Bos taurus	ENSBTAG00000013343	ortholog_many2many	33 retrogenes	retro_btau_1007, retro_btau_1011, retro_btau_1033, retro_btau_1197, retro_btau_1209, retro_btau_1277, retro_btau_1354, retro_btau_1396, retro_btau_1452, retro_btau_1464, retro_btau_1466, retro_btau_1481, retro_btau_1511, retro_btau_1540, retro_btau_1561, retro_btau_1683, retro_btau_1781, retro_btau_1798, retro_btau_1848, retro_btau_250, retro_btau_301, retro_btau_339, retro_btau_340, retro_btau_419, retro_btau_422, retro_btau_520, retro_btau_597, retro_btau_639, retro_btau_649, retro_btau_938, retro_btau_963, retro_btau_993, retro_btau_998,
Canis familiaris	ENSCAFG00000003861	possible_ortholog	1 retrogene	retro_cfam_203,
Callithrix jacchus	ENSCJAG00000000250	possible_ortholog	13 retrogenes	retro_cjac_1171, retro_cjac_1208, retro_cjac_1264, retro_cjac_1643, retro_cjac_2272, retro_cjac_2780, retro_cjac_3113, retro_cjac_3254, retro_cjac_3879, retro_cjac_556, retro_cjac_60, retro_cjac_889, retro_cjac_997,
Cavia porcellus	ENSCPOG00000020558	possible_ortholog	1 retrogene	retro_cpor_100,
Dasypus novemcinctus	ENSDNOG00000002455	possible_ortholog	9 retrogenes	retro_dnov_1096, retro_dnov_1135, retro_dnov_1177, retro_dnov_1737, retro_dnov_2006, retro_dnov_2352, retro_dnov_2678, retro_dnov_473, retro_dnov_993,
Dasypus novemcinctus	ENSDNOG00000004126	possible_ortholog	5 retrogenes	retro_dnov_1263, retro_dnov_1490, retro_dnov_1760, retro_dnov_2329, retro_dnov_299,
Dasypus novemcinctus	ENSDNOG00000005577	possible_ortholog	36 retrogenes	retro_dnov_103, retro_dnov_1164, retro_dnov_1215, retro_dnov_130, retro_dnov_1382, retro_dnov_1441, retro_dnov_1515, retro_dnov_1568, retro_dnov_1657, retro_dnov_1812, retro_dnov_1815, retro_dnov_1918, retro_dnov_1991, retro_dnov_2014, retro_dnov_2134, retro_dnov_2187, retro_dnov_236, retro_dnov_2376, retro_dnov_2379, retro_dnov_247, retro_dnov_2575, retro_dnov_2658, retro_dnov_2667, retro_dnov_285, retro_dnov_305, retro_dnov_432, retro_dnov_439, retro_dnov_543, retro_dnov_598, retro_dnov_642, retro_dnov_807, retro_dnov_841, retro_dnov_846, retro_dnov_849, retro_dnov_861, retro_dnov_897,
Dasypus novemcinctus	ENSDNOG00000007848	possible_ortholog	2 retrogenes	retro_dnov_1049, retro_dnov_1476,
Dasypus novemcinctus	ENSDNOG00000016683	possible_ortholog	8 retrogenes	retro_dnov_1134, retro_dnov_1329, retro_dnov_2023, retro_dnov_2194, retro_dnov_2228, retro_dnov_56, retro_dnov_757, retro_dnov_886,
Dipodomys ordii	ENSDORG00000015550	ortholog_one2many	5 retrogenes	retro_dord_222, retro_dord_34, retro_dord_618, retro_dord_776, retro_dord_79,
Felis catus	ENSFCAG00000003348	ortholog_many2many	37 retrogenes	retro_fcat_101, retro_fcat_1029, retro_fcat_1040, retro_fcat_1059, retro_fcat_1141, retro_fcat_1150, retro_fcat_1295, retro_fcat_1319, retro_fcat_1336, retro_fcat_1359, retro_fcat_139, retro_fcat_1522, retro_fcat_1523, retro_fcat_1602, retro_fcat_1658, retro_fcat_1741, retro_fcat_1747, retro_fcat_1764, retro_fcat_1765, retro_fcat_1766, retro_fcat_1799, retro_fcat_1812, retro_fcat_1901, retro_fcat_297, retro_fcat_298, retro_fcat_315, retro_fcat_343, retro_fcat_50, retro_fcat_533, retro_fcat_536, retro_fcat_620, retro_fcat_675, retro_fcat_68, retro_fcat_778, retro_fcat_918, retro_fcat_927, retro_fcat_964,
Homo sapiens	ENSG00000087086	possible_ortholog	11 retrogenes	retro_hsap_1647, retro_hsap_1955, retro_hsap_2407, retro_hsap_2484, retro_hsap_2942, retro_hsap_3842, retro_hsap_4146, retro_hsap_431, retro_hsap_4665, retro_hsap_4805, retro_hsap_929,
Gorilla gorilla	ENSGGOG00000011999	possible_ortholog	9 retrogenes	retro_ggor_128, retro_ggor_1547, retro_ggor_2039, retro_ggor_25, retro_ggor_2784, retro_ggor_2894, retro_ggor_420, retro_ggor_677, retro_ggor_750,
Loxodonta africana	ENSLAFG00000031248	possible_ortholog	11 retrogenes	retro_lafr_1003, retro_lafr_1064, retro_lafr_1065, retro_lafr_1069, retro_lafr_1206, retro_lafr_255, retro_lafr_345, retro_lafr_346, retro_lafr_785, retro_lafr_836, retro_lafr_977,
Microcebus murinus	ENSMICG00000001861	ortholog_one2many	7 retrogenes	retro_mmur_1017, retro_mmur_1238, retro_mmur_1420, retro_mmur_1506, retro_mmur_204, retro_mmur_214, retro_mmur_681,
Macaca mulatta	ENSMMUG00000003909	possible_ortholog	9 retrogenes	retro_mmul_1051, retro_mmul_1125, retro_mmul_1508, retro_mmul_1569, retro_mmul_1617, retro_mmul_1950, retro_mmul_481, retro_mmul_518, retro_mmul_989,
Mustela putorius furo	ENSMPUG00000003304	possible_ortholog	29 retrogenes	retro_mputfur_1012, retro_mputfur_1026, retro_mputfur_1133, retro_mputfur_1142, retro_mputfur_1150, retro_mputfur_1216, retro_mputfur_1222, retro_mputfur_1225, retro_mputfur_1238, retro_mputfur_1246, retro_mputfur_1268, retro_mputfur_1303, retro_mputfur_1335, retro_mputfur_1521, retro_mputfur_1620, retro_mputfur_195, retro_mputfur_222, retro_mputfur_265, retro_mputfur_350, retro_mputfur_356, retro_mputfur_368, retro_mputfur_482, retro_mputfur_66, retro_mputfur_702, retro_mputfur_741, retro_mputfur_80, retro_mputfur_820, retro_mputfur_906, retro_mputfur_952,
Mus musculus	ENSMUSG00000050708	possible_ortholog	1 retrogene	retro_mmus_228,
Nomascus leucogenys	ENSNLEG00000004716	possible_ortholog	10 retrogenes	retro_nleu_1099, retro_nleu_1332, retro_nleu_1871, retro_nleu_1977, retro_nleu_2028, retro_nleu_2180, retro_nleu_2294, retro_nleu_2715, retro_nleu_272, retro_nleu_290,
Oryctolagus cuniculus	ENSOCUG00000000014	possible_ortholog	6 retrogenes	retro_ocun_1090, retro_ocun_1627, retro_ocun_223, retro_ocun_357, retro_ocun_530, retro_ocun_982,
Ochotona princeps	ENSOPRG00000002492	possible_ortholog	10 retrogenes	retro_opri_187, retro_opri_270, retro_opri_422, retro_opri_43, retro_opri_551, retro_opri_618, retro_opri_702, retro_opri_785, retro_opri_883, retro_opri_886,
Procavia capensis	ENSPCAG00000013227	possible_ortholog	6 retrogenes	retro_pcap_120, retro_pcap_156, retro_pcap_258, retro_pcap_376, retro_pcap_384, retro_pcap_85,
Pongo abelii	ENSPPYG00000010223	possible_ortholog	11 retrogenes	retro_pabe_1362, retro_pabe_1615, retro_pabe_1690, retro_pabe_1814, retro_pabe_2514, retro_pabe_291, retro_pabe_3056, retro_pabe_3463, retro_pabe_3626, retro_pabe_3734, retro_pabe_800,
Pan troglodytes	ENSPTRG00000011268	possible_ortholog	11 retrogenes	retro_ptro_1118, retro_ptro_1307, retro_ptro_1437, retro_ptro_2055, retro_ptro_2619, retro_ptro_2818, retro_ptro_3101, retro_ptro_3195, retro_ptro_328, retro_ptro_645, retro_ptro_98,
Pteropus vampyrus	ENSPVAG00000009570	ortholog_one2many	25 retrogenes	retro_pvam_1054, retro_pvam_1076, retro_pvam_1205, retro_pvam_1228, retro_pvam_1241, retro_pvam_1270, retro_pvam_1276, retro_pvam_1311, retro_pvam_1383, retro_pvam_1385, retro_pvam_1471, retro_pvam_1479, retro_pvam_229, retro_pvam_29, retro_pvam_314, retro_pvam_322, retro_pvam_377, retro_pvam_41, retro_pvam_447, retro_pvam_47, retro_pvam_491, retro_pvam_519, retro_pvam_542, retro_pvam_677, retro_pvam_959,
Rattus norvegicus	ENSRNOG00000020843	possible_ortholog	7 retrogenes	retro_rnor_109, retro_rnor_168, retro_rnor_263, retro_rnor_306, retro_rnor_362, retro_rnor_373, retro_rnor_4,
Sorex araneus	ENSSARG00000011741	ortholog_one2many	12 retrogenes	retro_sara_264, retro_sara_315, retro_sara_359, retro_sara_384, retro_sara_404, retro_sara_408, retro_sara_476, retro_sara_486, retro_sara_506, retro_sara_634, retro_sara_728, retro_sara_87,
Sus scrofa	ENSSSCG00000014540	other_paralog	9 retrogenes	retro_sscr_1045, retro_sscr_168, retro_sscr_286, retro_sscr_359, retro_sscr_498, retro_sscr_581, retro_sscr_78, retro_sscr_906, retro_sscr_949,
Ictidomys tridecemlineatus	ENSSTOG00000020639	ortholog_many2many	7 retrogenes	retro_itri_1606, retro_itri_1701, retro_itri_1857, retro_itri_24, retro_itri_355, retro_itri_719, retro_itri_741,
Tupaia belangeri	ENSTBEG00000005311	possible_ortholog	13 retrogenes	retro_tbel_1144, retro_tbel_1624, retro_tbel_1889, retro_tbel_2263, retro_tbel_263, retro_tbel_2652, retro_tbel_2802, retro_tbel_2916, retro_tbel_3508, retro_tbel_3622, retro_tbel_3735, retro_tbel_795, retro_tbel_931,
Tarsius syrichta	ENSTSYG00000013988	ortholog_one2many	56 retrogenes	retro_tsyr_1035, retro_tsyr_1059, retro_tsyr_106, retro_tsyr_1111, retro_tsyr_1131, retro_tsyr_1139, retro_tsyr_1194, retro_tsyr_1228, retro_tsyr_1241, retro_tsyr_1248, retro_tsyr_1306, retro_tsyr_1315, retro_tsyr_1334, retro_tsyr_1348, retro_tsyr_135, retro_tsyr_1362, retro_tsyr_1372, retro_tsyr_160, retro_tsyr_1716, retro_tsyr_1794, retro_tsyr_1828, retro_tsyr_1841, retro_tsyr_1846, retro_tsyr_1885, retro_tsyr_1975, retro_tsyr_1992, retro_tsyr_2009, retro_tsyr_2046, retro_tsyr_2055, retro_tsyr_228, retro_tsyr_233, retro_tsyr_301, retro_tsyr_341, retro_tsyr_353, retro_tsyr_354, retro_tsyr_43, retro_tsyr_435, retro_tsyr_441, retro_tsyr_489, retro_tsyr_509, retro_tsyr_517, retro_tsyr_618, retro_tsyr_648, retro_tsyr_65, retro_tsyr_661, retro_tsyr_663, retro_tsyr_729, retro_tsyr_758, retro_tsyr_777, retro_tsyr_861, retro_tsyr_925, retro_tsyr_932, retro_tsyr_945, retro_tsyr_947, retro_tsyr_962, retro_tsyr_964,
Vicugna pacos	ENSVPAG00000005509	ortholog_one2many	3 retrogenes	retro_vpac_119, retro_vpac_206, retro_vpac_258,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_sscr_74	70.25	90.29	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_sscr_124	64.81	60.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_sscr_197	60.96	83.43	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_sscr_212	65.88	97.14	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_sscr_224	71.43	74.86	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_sscr_305	64.18	74.86	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_sscr_331	67.59	82.86	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_sscr_400	75.84	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_sscr_531	57.04	73.14	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_sscr_532	55.56	73.14	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_sscr_533	54.19	98.29	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_sscr_534	53.21	59.43	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_sscr_535	52.54	98.29	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_sscr_536	56.30	73.14	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_sscr_559	54.44	98.29	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_sscr_589	63.92	53.71	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_sscr_605	63.92	53.71	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_sscr_747	77.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_sscr_799	52.78	61.14	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_sscr_817	76.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_sscr_830	71.75	100.00	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_sscr_833	63.35	90.29	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_sscr_839	54.70	98.29	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_sscr_840	54.70	98.29	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_sscr_862	59.89	97.71	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_sscr_898	75.48	87.43	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_sscr_1040	73.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_sscr_1095	75.89	62.86	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_sscr_1101	65.88	97.14	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_sscr_1142	59.80	56.57	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_sscr_1189	59.55	100.00	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_sscr_1214	63.64	85.14	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_sscr_1215	58.20	69.14	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSSCG00000003153 retrocopies

Parental gene:	FTL, ENSSSCG00000003153
Aliases:	None
Description:	Sus scrofa ferritin, light polypeptide (FTL), mRNA. [Source:RefSeq mRNA;Acc:NM_001244131]
Organism:	*Pig (Sus scrofa)*
Coordinates:	6:50095906..50097543(-)

Parental gene:

FTL, ENSSSCG00000003153