RetrogeneDB ID: | retro_mmus_2103 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:148071162..148071666(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083750 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cfl1 | ||
Ensembl ID: | ENSMUSG00000056201 | ||
Aliases: | None | ||
Description: | cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757] |
Percent Identity: | 73.53 % |
Parental protein coverage: | 74.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKL |
DVG..VD.PYTTFVKMLPDKDC.YALYD.TYETKESKKEDLV.I..APE..P.KSKMIYASSKDA.KKKL | |
Retrocopy | DVG--VDVPYTTFVKMLPDKDCHYALYDTTYETKESKKEDLVVIC*APESVPPKSKMIYASSKDATKKKL |
Parental | TGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL-SHPAPCLEHLNSPRPALGCCRLPLSCQTGGA |
TGIKHELQANCY.E..D.CTL.EKL..S..ISLE.KPL.....P.......PRPAL.CC.L.LSCQTGGA | |
Retrocopy | TGIKHELQANCYKEITDHCTLTEKLESSSIISLESKPL*ATSSPLPGASRNPRPALVCCKLTLSCQTGGA |
Parental | GGIPAGGGLSLHPSCQTSLPPPGPSFSLHP |
.GI..GGGL.L.PSCQT.LP.PGP.FSLHP | |
Retrocopy | EGIQVGGGLTLNPSCQTPLPNPGPFFSLHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 385 .58 RPM |
SRP007412_cerebellum | 0 .04 RPM | 286 .45 RPM |
SRP007412_heart | 0 .00 RPM | 80 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 152 .73 RPM |
SRP007412_liver | 0 .03 RPM | 115 .90 RPM |
SRP007412_testis | 0 .00 RPM | 106 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mus musculus | ENSMUSG00000015932 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056201 | 6 retrocopies |
retro_mmus_1729, retro_mmus_2103 , retro_mmus_3127, retro_mmus_3556, retro_mmus_719, retro_mmus_970,
|
Mus musculus | ENSMUSG00000062929 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016751 | 2 retrocopies |