RetrogeneDB ID: | retro_cfam_67 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:49689759..49690227(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000020009 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSCAFG00000024955 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 88.81 % |
Parental protein coverage: | 86.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATF |
ASGVAVSD.VIK.FNDMKVRKSSTPEEVKKRKK.VL.CL.EDKKNI.LEE.KEILVGDVGQTV.DP.ATF | |
Retrocopy | ASGVAVSDCVIKMFNDMKVRKSSTPEEVKKRKKSVLLCLGEDKKNI-LEEAKEILVGDVGQTVHDPHATF |
Parental | VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYE |
VKMLPDKDCRYALYD.TY...ESKKEDLVF.FWAPESAPLKSKMIYASSKDAIKKKLT.IKHELQANCY. | |
Retrocopy | VKMLPDKDCRYALYDTTY---ESKKEDLVFTFWAPESAPLKSKMIYASSKDAIKKKLTRIKHELQANCYK |
Parental | EVK |
EVK | |
Retrocopy | EVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 541 .62 RPM |
SRP017611_brain | 0 .00 RPM | 280 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 241 .23 RPM |
SRP017611_liver | 0 .07 RPM | 54 .02 RPM |