RetrogeneDB ID: | retro_cfam_660 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:35872317..35872763(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSCAFG00000024955 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 54.9 % |
Parental protein coverage: | 91.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEE-GKEILVGDVGQTVDDPYATFVKMLPDKDCRYA |
F.DM.V.K.S.P.EVKK.KK.VL..L.EDKK...L.E.G.....GDVGQ....P..TFVK.L..KDC.Y. | |
Retrocopy | FPDMQVHKPSMPKEVKKHKKVVL*DLQEDKK--VLRE<GGPGVPGDVGQAGNNPCVTFVKTLMIKDCHYV |
Parental | LYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKL |
L.D...E..E.KK..L.F..W.P.S...KS.MIYASS.D.I.KKL..IKHELQ.NC.E.V.D..TL..K. | |
Retrocopy | LSDVNEEIQECKKGGLLFTLWIPQSLLSKSRMIYASS*DIIQKKLMEIKHELQVNCQEKVRDPGTL-QKS |
Parental | GGSAVISLEGKPL |
GG....SLEG.PL | |
Retrocopy | GGQHPLSLEGQPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 541 .62 RPM |
SRP017611_brain | 0 .00 RPM | 280 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 241 .23 RPM |
SRP017611_liver | 0 .00 RPM | 54 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1382 |