RetrogeneDB ID: | retro_mmul_667 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214130865:616..1062(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4381 | ||
Ensembl ID: | ENSMMUG00000019016 | ||
Aliases: | CFL1, cofilin-1 | ||
Description: | cofilin-1 [Source:RefSeq peptide;Acc:NP_001253534] |
Percent Identity: | 78.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDA |
.KV.KS.TPE.VKK..KAVLFCLSEDKKNIIL.EG.E.L.GDVGQT..DPY.TFV.MLPDK.CRYALY.. | |
Retrocopy | LKVCKSLTPEKVKKHRKAVLFCLSEDKKNIILGEGNETLAGDVGQTIHDPYTTFVEMLPDKNCRYALYAT |
Parental | TYET-KESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGS |
.YET.K.SK.EDLV.IFWAPE.APL.SKMI.ASSK.AIKKKLTG.KHELQANC.EEVKD.CTLAEKLGG. | |
Retrocopy | IYET<KKSKEEDLVSIFWAPEPAPLISKMI*ASSKNAIKKKLTGSKHELQANCFEEVKDCCTLAEKLGGI |
Parental | AVISLEGKPL |
A.I.LEGKPL | |
Retrocopy | AFIPLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 229 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 401 .89 RPM |
SRP007412_cerebellum | 0 .06 RPM | 146 .26 RPM |
SRP007412_heart | 0 .06 RPM | 71 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 130 .28 RPM |
SRP007412_liver | 0 .00 RPM | 123 .58 RPM |
SRP007412_testis | 0 .00 RPM | 82 .13 RPM |