RetrogeneDB ID: | retro_cfam_943 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:64345614..64346109(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSCAFG00000024955 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 89.7 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATF |
ASGV.VSDGVIK.FNDMKV.KSSTPEEVKKRKKAVLFCLSEDKK.IILEEGKEILVGDVG.TVDD.YATF | |
Retrocopy | ASGVVVSDGVIKMFNDMKVPKSSTPEEVKKRKKAVLFCLSEDKKDIILEEGKEILVGDVGRTVDDLYATF |
Parental | VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYE |
VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESA.LKSKMIYA.SKDAIKKK.T.I.HE..A.CYE | |
Retrocopy | VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESALLKSKMIYARSKDAIKKKRTWIMHEF*AICYE |
Parental | EVKDRCTLAEKLGGSAVISLEGKPL |
EVK..CTLAEKLGGSA.ISLEGKPL | |
Retrocopy | EVKVHCTLAEKLGGSAIISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 541 .62 RPM |
SRP017611_brain | 0 .00 RPM | 280 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 241 .23 RPM |
SRP017611_liver | 0 .00 RPM | 54 .02 RPM |