RetrogeneDB ID: | retro_rnor_693 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:56306744..56306994(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cfl1 | ||
Ensembl ID: | ENSRNOG00000020660 | ||
Aliases: | None | ||
Description: | Cofilin-1 [Source:UniProtKB/Swiss-Prot;Acc:P45592] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 53.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCY-EEVKDR |
D.RY.L.DA...TKES.....L.F.FWAPESAPL.SKMI.ASSKDAIKK.LTGIKHELQANC..EEVK.. | |
Retrocopy | DRRYTL*DA---TKESEED>NLLFNFWAPESAPLQSKMICASSKDAIKKNLTGIKHELQANCFEEEVKAC |
Parental | CTLAEKLGGSAVISLEGKPL |
CTLAEKLGG...I.LE.KPL | |
Retrocopy | CTLAEKLGG---IFLEHKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 567 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 290 .78 RPM |
SRP017611_liver | 0 .00 RPM | 59 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_719 |