RetrogeneDB ID: | retro_cfam_366 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:58281545..58282036(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSCAFG00000024955 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 64.71 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNII-LEEGKEILVGDVGQTVDDPYAT |
ASG.AVSDGVIKV..DMKV.KSSTPE.VKKRKKAV.FCL..DK.N.I.LEEGK.ILVG...QTV.D.... | |
Retrocopy | ASGIAVSDGVIKVLDDMKVCKSSTPEDVKKRKKAVFFCLNKDK-NVI<LEEGKVILVGYLDQTVEDSTYA |
Parental | FVKMLPDKD-CRYALYDA-TYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA |
.....P..D.C.YA.YD.....TKE..K.EDLVFIFWAP.S...KS..I.ASSK..IKK.LTGI.H.L.. | |
Retrocopy | ICPDSPARD<CHYAPYDV<NFKTKET<KEEDLVFIFWAPGSEAFKSTVI*ASSKHIIKKGLTGIQHRL*P |
Parental | NCYEEVKDRCTLAEKLGG-SAVISLEGKPL |
N.YEEVKD.CTLAE.L.G.SA.I.LE.KPL | |
Retrocopy | NYYEEVKDHCTLAE*LKGVSANIFLEDKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 541 .62 RPM |
SRP017611_brain | 0 .00 RPM | 280 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 241 .23 RPM |
SRP017611_liver | 0 .00 RPM | 54 .02 RPM |