RetrogeneDB ID:

retro_ogar_1581

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873553.1:8878284..8878550(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000016503
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1581
GTCAGTGAGCTGCCAGATATGGCTGCTGCTGAGCCCTCTATGACCAACCTATGAGACAAAGAGAGCAAGGAGGAGAACCT
GCTGTCCATCTTCTGGGCCCCTGAGTTTACACCTCTTATGAGCAAAATGACCTCTGCCAGTTCTAAGGACATGACCAAGG
AGATGCTGTCAAGGCTCAAGCATGAATTACAAGCAAACTGCTCCAAGGAGGTCCAGGACCGTGCAGCCTGGCAGAGAAGC
TGGAGGGAAAGTGCTGTCATTCCCTG

ORF - retro_ogar_1581 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.7 %
Parental protein coverage: 54.22 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalVKMLPDK-DCRYALYDA-TYETK-ESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQAN
V..LPD...C..ALYD..TYETK.ESK.E.L..IFWAPE..PL.SKM..ASSKD..K..L...KHELQAN
RetrocopyVSELPDM<GCC*ALYDQ<TYETK<ESKEENLLSIFWAPEFTPLMSKMTSASSKDMTKEMLSRLKHELQAN
ParentalCYEEVKDR-CTLAEKLGGSAVISL
C..EV.DR.C.LAEKL.G....SL
RetrocopyCSKEVQDR<CSLAEKLEGKCCHSL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1581 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 78 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000173342 retrocopies
Bos taurus ENSBTAG000000214551 retrocopy
Canis familiaris ENSCAFG000000249556 retrocopies
Callithrix jacchus ENSCJAG000000019161 retrocopy
Equus caballus ENSECAG000000199001 retrocopy
Felis catus ENSFCAG000000132723 retrocopies
Homo sapiens ENSG000001727576 retrocopies
Gorilla gorilla ENSGGOG000000231835 retrocopies
Microcebus murinus ENSMICG000000127631 retrocopy
Myotis lucifugus ENSMLUG000000246856 retrocopies
Mustela putorius furoENSMPUG000000115022 retrocopies
Mus musculus ENSMUSG000000562016 retrocopies
Nomascus leucogenys ENSNLEG000000058525 retrocopies
Oryctolagus cuniculus ENSOCUG000000256044 retrocopies
Otolemur garnettii ENSOGAG00000016503 8 retrocopies
Otolemur garnettii ENSOGAG000000323211 retrocopy
Pongo abelii ENSPPYG000000030475 retrocopies
Pan troglodytes ENSPTRG000000038955 retrocopies
Rattus norvegicus ENSRNOG000000206602 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000279684 retrocopies
Tupaia belangeri ENSTBEG000000167512 retrocopies
Tursiops truncatus ENSTTRG000000169312 retrocopies



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