RetrogeneDB ID: | retro_cfam_1544 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 34:16517354..16517847(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSCAFG00000024955 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 82.42 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFV |
SG..VSDGVIKVF.DM.V.KSST.E...K.KKAVLFCL.EDKKNIILEEGKE.LVGDVG..V.D.Y.TFV | |
Retrocopy | SGMVVSDGVIKVFSDMRVCKSSTSEGL*KCKKAVLFCLGEDKKNIILEEGKELLVGDVGEAVEDTYTTFV |
Parental | KMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEE |
K.LPDKDC.Y.LYDATYETKESKKE.L.FIF.APESAPLKSKMI.ASSKDAIKKKLT.IKHELQ.NCYEE | |
Retrocopy | KILPDKDCHYVLYDATYETKESKKENLMFIFGAPESAPLKSKMIFASSKDAIKKKLTRIKHELQTNCYEE |
Parental | VKDRCTLAEKL-GGSAVISLEGKPL |
VKD..TLAEKL.GGSAVISLEGKPL | |
Retrocopy | VKDGYTLAEKL>GGSAVISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 541 .62 RPM |
SRP017611_brain | 0 .00 RPM | 280 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 241 .23 RPM |
SRP017611_liver | 0 .00 RPM | 54 .02 RPM |